SOC1, JX546224.1-SOC1.m1 (mRNA) Prunus armeniaca

Transcript Overview


Name	SOC1
Unique Name	JX546224.1-SOC1.m1
Type	mRNA
Organism	Prunus armeniaca (Apricot)
Source	genbank
Product	SOC1
Genbank Note	SOC1-like protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SOC1	JX546224.1-SOC1	Prunus armeniaca	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
JX546224.1-SOC1.m1-5utr1	JX546224.1-SOC1.m1-5utr1	Prunus armeniaca	five_prime_UTR
JX546224.1-SOC1.m1-5utr2	JX546224.1-SOC1.m1-5utr2	Prunus armeniaca	five_prime_UTR

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
JX546224.1-SOC1.m1-3utr1	JX546224.1-SOC1.m1-3utr1	Prunus armeniaca	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
JX546224.1-SOC1.m1-cds1	JX546224.1-SOC1.m1-cds1	Prunus armeniaca	CDS
JX546224.1-SOC1.m1-cds2	JX546224.1-SOC1.m1-cds2	Prunus armeniaca	CDS
JX546224.1-SOC1.m1-cds3	JX546224.1-SOC1.m1-cds3	Prunus armeniaca	CDS
JX546224.1-SOC1.m1-cds4	JX546224.1-SOC1.m1-cds4	Prunus armeniaca	CDS
JX546224.1-SOC1.m1-cds5	JX546224.1-SOC1.m1-cds5	Prunus armeniaca	CDS
JX546224.1-SOC1.m1-cds6	JX546224.1-SOC1.m1-cds6	Prunus armeniaca	CDS
JX546224.1-SOC1.m1-cds7	JX546224.1-SOC1.m1-cds7	Prunus armeniaca	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
SOC1	JX546224.1-SOC1.p1	Prunus armeniaca	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	444230590
nuccore	JX546224.1

Alignments

Feature Name	Type	Location	Analysis
JX546224	region	JX546224:1..4952+	NCBI Rosaceae gene and mRNA sequences
scaffold_2	supercontig	scaffold_2:17024544..17029254-	Prunus persica Whole Genome v1.0 Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at JX546224:1..4952+
coding sequence from alignment at JX546224:1..4952+

mRNA sequence

>JX546224.1-SOC1.m1 ID=JX546224.1-SOC1.m1; Name=SOC1; organism=Prunus armeniaca; type=mRNA; length=645bp
atggtgagaggaaaaacccagatgaggcgcatagagaacgccaccagccg
gcaagtcaccttctcaaagaggagaagtggtcttctaaagaaggcctttg
agctttcagttctttgtgatgctgaggttgcgctcataatattctctcca
aggggaaagctctatgaatttgcaagttcgagcatgcagacaaccataga
acgttatcagaagcatacaaaagacaaccttaccaacaacaaatccgttt
ccactgaccaaaatatgcagcacctgaagcaagaatcatctagcatgatg
aagcagatagagtttcttgaaatatcaaaacggaagctcttgggagaggg
tctaggatcatgcagtattgaagagctacaagaaattgagcaacagttgg
agaggagcgtgagcaatgttcgagcaagaaagactcaagttttcaaggaa
cagattgagcaactgagagaaaaggggaaagccctagcagctgaaaatga
aagactaattgagaagtgtggtagaatccaaccaaggcaagcatcaaatg
agcaaagagaaaacttagcctacactgaaagtagtccaagttcagatgtt
gagactgaattgttcattggactgccagaaagaagaaagcgctag

protein sequence of SOC1

>JX546224.1-SOC1.p1 ID=JX546224.1-SOC1.p1; Name=SOC1; organism=Prunus armeniaca; type=polypeptide; length=214bp
MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSP
RGKLYEFASSSMQTTIERYQKHTKDNLTNNKSVSTDQNMQHLKQESSSMM
KQIEFLEISKRKLLGEGLGSCSIEELQEIEQQLERSVSNVRARKTQVFKE
QIEQLREKGKALAAENERLIEKCGRIQPRQASNEQRENLAYTESSPSSDV
ETELFIGLPERRKR

mRNA from alignment at JX546224:1..4952+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>JX546224.1-SOC1.m1 ID=JX546224.1-SOC1.m1; Name=SOC1; organism=Prunus armeniaca; type=mRNA; length=4952bp; location=Sequence derived from: JX546224:1..4952+ (Prunus armeniaca
ccaatttcttaacactcaattcttcccctttgcctctctttctctctctc
tctctctctctctatctctctctctctctctctctccttcatatcttcat
tttgattaaggaactcatatttcctttacacaaattctatatattgattg
cttatttgaattgaagaagaggatccaatatatttaacctcatctttatc
atctttccaagtcctacccacaagtcacaaacctctctcttccacaaaac
aaacccaaaacaagcttcttgggttaattttacctattgggtaagattca
attaacttcttcaccttcttctcaactctcatccctttttgacacattgg
gttctgaatagatttgtgcagtgaaagctgagagcgcttccttctgttaa
aaatggtgagaggaaaaacccagatgaggcgcatagagaacgccaccagc
cggcaagtcaccttctcaaagaggagaagtggtcttctaaagaaggcctt
tgagctttcagttctttgtgatgctgaggttgcgctcataatattctctc
caaggggaaagctctatgaatttgcaagttcgaggtatttatttataagc
ttccccacatatatatatatttatattaatgttcttttttatgaatgaga
attaatagatccagtattagtatatataatcactgtcaagcataaataaa
taatggtctgtacgatcgaggtttgtaggtttatatataaagtccttttt
tccttttccctctaagttgcatatttgtttttcgttagtacttgcatttc
tatttatagtaacctttgaacaagtggcacagtaatctagtttccttcca
ctgagtttggcttgctattgttaattactaatgagtttcttcatcctcag
aaactgaaggaagactaatgtacgaaaagatttacatcaaacaaacctgg
cttaatcacaattaatgcttttattaagtttttttattgtttgtaatttt
aattaacaagagaggacaaagatgtgggaagagcgagagaaaagacatta
ttaccacatcagttttttcgtccaaaccttgagatatgatcattttcatt
ctagatgtccatttttcctaaaattacaatcgatcccagtgcacagtaat
tattattattatttaaattttttttttcagttgggagataatattattta
gtttagcacatcaggaaaatgtattgagagaaatgcatcatcatcatcat
cttcatttttttctcaaaattattttttaaatggcgatgagtgcatgcaa
aatttaataattaaaaaaaaaactacaaaaaaatattaaaataggatttg
tattttcttaaacagctttgaaaaaacatcaatttcagtccacatacata
catgtatgttttccataaaatttgtattattagactgtatttgttgagat
ctatcaaataagactcaaaatgaatacacatgaaaatatgtacgaaaaaa
aggtgaaacaatttacttttataatgcactgtatatagcctcagaaggga
tgattaactgcagtcacttcatgatatacacgtgtattttgaatacagta
tcctgattgatgacatgtttcacatttgaaagatcattatccttcttttc
atgcatacgtttatcttcatcatgtagtacatgaacctattatagttttc
atttagtttaggatcccctaaggtattgtagtatttccagaactttttaa
tagttaacttcggaaatttatgcaaacagtttggatgttatttgtacagc
aactagggtttctatgtttgtctataactaaaccttctatatatgttgcc
aacacggtctagcctagtggaaaaaggcattaacttatatacgtggtatt
aagttcaaactccggtgacaacttagtagtgtgtgtgtgagatatcccct
tcccttctaatgtagactattatacatgtgtagaacattctgataacctt
tttctatgatggattccgtaggcattagggatttaattaagggtttcttt
tatcactttcttttgtgaaccaaatgcaaagttcagtaaactcttgactg
cagtatatgcatatcttgtcaatctattctatagcccgctactatactgt
tactctgcctagctactttcaaccgcttccatggtagggctgttatagca
gtagcagttttgggagcacagtgtgcataaagtaacttgttttttagttg
gaacgcttaaaataacttggacacgattgtgtgaaaggtagagagagaca
gagagaaagacaacaatgtactttacacatttatgtcatagctgtgcccg
tgacaaattttgtaatcgccatataggacatangctcctagagtcactca
ttatttcttgtactatgtacatattttgccaaagtagagttatttgccat
gccatgaaatgatgtgtcatgcatgtccagattcttatctttctcttgta
atgtattttccaagtttgaacaaaataaggtaaacagtagtaggtagagg
gtttggatttaaactctaatttaagtcacataaaatcatatgagtgtaga
tgcataaacccaaataatcaccagtagttatcaacacacaaatcatcctt
aggtttctgtatcctggaaatgtatgaagtgattgcatttgggtgagaat
ttccttgtttgatgacaacgaatacaatcttttctacccaagccaaacaa
ataattcactaaaacacaaagtttactacatggaccaagccagattaaga
atttgtgaaacaatatccggcaattttcaccttgaatcaaattctgtcaa
cccaattatattgctgaagttgtcatagatgggtattttgtggtgtgcca
tccttgtttcttcttcctctagattggtacttttcagaaattattagggt
tgggtgtgtcatccttgctgcttcttccttttccttttttttttctttca
aatcagtattatgtggaaatcaagcatttttgttatgttgaaagctgtag
ttgtcttgaaaaacagattcaagatataatgatgtatcggcagatatttt
catccttgcctatgaacgtgagcatattttggatcatgttaaattcttcg
tgttcattttattttatcttccaattcattcttggttgcttgagtttgat
tgatattctcattcataactaatctatcctaacataaaattcgaaccacc
taatgtaattctctatgttctttgtgattgccttatttgtttttactcat
ttatattaattctctcgttcttttacttgtcataataaacccccaagtca
agtttcacgtgcaatgttctactactacatcaaaaccacgagcagtgtat
gttaatgttttagcaatagaggaaacgatgaaccaccatatattttccta
cgcctttttggcttgccatattacatgccatgttatctctaattctatga
aacacaacgttttaaataacatatacaggatttgttcatttgaatacatt
ggttttaatactcagcatgcagacaaccatagaacgttatcagaagcata
caaaagacaaccttaccaacaacaaatccgtttccactgaccaaaatatg
caggtgaattcttggaaaccattacctttcttccaaaatttgactggagt
gaactggccgcactttttggaccctgaactctaaacaaatcatatgaaag
tgcattagattttttttctcttggttttctgatgagtttgcatttgaatt
gttgtgcagcacctgaagcaagaatcatctagcatgatgaagcagataga
gtttcttgaaatatcaaaacggttcatctgaaacttttcttgtatcttat
aacacgccgtagttgaaatagtcagtttttttttttctctcttgttttac
aaagcgcctctttctgaacctggaattgcaattgcttcaggaagctcttg
ggagagggtctaggatcatgcagtattgaagagctacaagaaattgagca
acagttggagaggagcgtgagcaatgttcgagcaagaaaggttgatctta
aaccaaacgttgtgctgcatttttcaatagaatctgatagtaacagtctc
atttttactaaatggatatttaacctactttttgtttttttgcctaatac
tccagactcaagttttcaaggaacagattgagcaactgagagaaaaggta
aactgccgcaataaaaagttttaaaaaaattctgggctgtttgttgttct
atattcccaaagtttttgcttgtgctactagctaactaaatgtgaacctt
ttattttttcggttgatgaaattcaggggaaagccctagcagctgaaaat
gaaagactaattgagaaggtaagtgcctcctctcaatttcttaattttat
atataaataaactttttctgttttcattttcatcctatgatgtcatggat
atgcattcaaagctaaattgttggacatgacgaatctgcttcgaagaaac
cgaaaaactcaatatatgttaaacaattttttattcttctttgtagtgtg
gtagaatccaaccaaggcaagcatcaaatgagcaaagagaaaacttagcc
tacactgaaagtagtccaagttcagatgttgagactgaattgttcattgg
actgccagaaagaagaaagcgctagcttctcctcagagtgcttaatattc
taatgccatggctgagctggaatataaaattctatagtttttagattgtt
ttgttttctgcattagattgttgctccgctaaattgctgcattggagctt
tgcaagcaataagactgtattgtaatagggatcatattaattgtcttctt
gaaatgattgtgatgcatatatatatgaccacgaaatactattggactat
ct

Coding sequence (CDS) from alignment at JX546224:1..4952+

>JX546224.1-SOC1.m1 ID=JX546224.1-SOC1.m1; Name=SOC1; organism=Prunus armeniaca; type=CDS; length=645bp; location=Sequence derived from: JX546224:1..4952+ (Prunus armeniaca
atggtgagaggaaaaacccagatgaggcgcatagagaacgccaccagccg
gcaagtcaccttctcaaagaggagaagtggtcttctaaagaaggcctttg
agctttcagttctttgtgatgctgaggttgcgctcataatattctctcca
aggggaaagctctatgaatttgcaagttcgagcatgcagacaaccataga
acgttatcagaagcatacaaaagacaaccttaccaacaacaaatccgttt
ccactgaccaaaatatgcagcacctgaagcaagaatcatctagcatgatg
aagcagatagagtttcttgaaatatcaaaacggaagctcttgggagaggg
tctaggatcatgcagtattgaagagctacaagaaattgagcaacagttgg
agaggagcgtgagcaatgttcgagcaagaaagactcaagttttcaaggaa
cagattgagcaactgagagaaaaggggaaagccctagcagctgaaaatga
aagactaattgagaagtgtggtagaatccaaccaaggcaagcatcaaatg
agcaaagagaaaacttagcctacactgaaagtagtccaagttcagatgtt
gagactgaattgttcattggactgccagaaagaagaaagcgctag