NDHD, JX118217.1-NDHD.m2 (mRNA) Fragaria vesca subsp. vesca

Transcript Overview


Name	NDHD
Unique Name	JX118217.1-NDHD.m2
Type	mRNA
Organism	Fragaria vesca subsp. vesca ()
Source	genbank
Product	NADH-plastoquinone oxidoreductase subunit 4

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NDHD	JX118217.1-NDHD	Fragaria vesca subsp. vesca	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
JX118217.1-NDHD.m2-cds1	JX118217.1-NDHD.m2-cds1	Fragaria vesca subsp. vesca	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NDHD	JX118217.1-NDHD.p2	Fragaria vesca subsp. vesca	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	402239382
nuccore	JX118217.1

Alignments

Feature Name	Type	Location	Analysis
JX118217	region	JX118217:1352..2854-	NCBI Rosaceae gene and mRNA sequences

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at JX118217:1352..2854-
coding sequence from alignment at JX118217:1352..2854-

mRNA sequence

>JX118217.1-NDHD.m2 ID=JX118217.1-NDHD.m2; Name=NDHD; organism=Fragaria vesca subsp. vesca; type=mRNA; length=1503bp
atgaataattttccttggttaacgctagttnnnnnnnnnnnnnnnnnnnn
nnnnnccttaattttctttcttcctcatnnnnnnnnnnnnnnnnnnnnnn
nntatactttatgtatatgcataatagaactccttctaacaacctatgca
ttcagttatcgtttccaattggatgatccgttaatgcaactaacggagaa
ttataaatggatcaatttttttgatttttactggagattgggaatagatg
gaatttctataggacccattttactgacaggatttattacaactttagct
actttagcggcttggcccgttactcgagattcccgactattccatttcct
aatgttagcaatgtatagcggtcaaataggaccattttcttctcaagacc
ttttactttttttcatcatgtgggagttagaattaattcccgtttatcta
cttctatccatgtgggggggaaagaaacgtttgtattcagctacaaaatt
tattttgtacactgccggaggttctgtttttttattaataggagttctgg
gtattggtttatacggctccaatgaaccgacannnaattttgaaacatca
gcgaatcaatcatatcctgtagcactggaaataatattctatattggatt
tcttattgcttttgctgtcaaatcaccgatcatacccctacacacatggt
taccagacacccatggagaggcacattatagtacttgtatgcttttagcc
ggaatcttattaaaaatgggagcgtatgggttgattcgaatcaatatgga
attattaccccacgcccattctatattttctccctggttgatgatagtcg
gcacaattcaaattatctatgcagctttaacatctcctggccagcgtaat
ttaaaaaaaagaatagcctattcttctgtatctcatatgggtttcataat
tataggaattggttctataagcgatacagggctcaatgggactattttac
aaataatttctcacggatttattggcgctgcgctttttttcttggccgga
acgagttatgatagaatacgacttgtttatctcgacgaaatgggcggaat
ggctatctcaattccaaaaatattcacgactttcagtatcttatcaatgg
cttcgcttgcattaccgggcatgagcggttttgttgccgaattgnnnntt
ttttttggaatacttactagccaaaaatatcttttaatgacaaaaatatt
aattacttttgtaatggcaattggaatgatattaactcctatttattcat
tatctatgttacgccagatgttctatggatacaagctttttaatgcccca
aattcttatttttttgattctgggccgcgagagttatttatttcgatttc
tatccttttacctgtaataggtattggtatttatcccgatttcgttttct
cattatcagttgacaaggccgaagctattctatcaaattttttttataga
tag

protein sequence of NDHD

>JX118217.1-NDHD.p2 ID=JX118217.1-NDHD.p2; Name=NDHD; organism=Fragaria vesca subsp. vesca; type=polypeptide; length=500bp
MNNFPWLTLVXXXXXXXXXLIFFLPHXXXXXXXXYTLCICIIELLLTTYA
FSYRFQLDDPLMQLTENYKWINFFDFYWRLGIDGISIGPILLTGFITTLA
TLAAWPVTRDSRLFHFLMLAMYSGQIGPFSSQDLLLFFIMWELELIPVYL
LLSMWGGKKRLYSATKFILYTAGGSVFLLIGVLGIGLYGSNEPTXNFETS
ANQSYPVALEIIFYIGFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLA
GILLKMGAYGLIRINMELLPHAHSIFSPWLMIVGTIQIIYAALTSPGQRN
LKKRIAYSSVSHMGFIIIGIGSISDTGLNGTILQIISHGFIGAALFFLAG
TSYDRIRLVYLDEMGGMAISIPKIFTTFSILSMASLALPGMSGFVAELXX
FFGILTSQKYLLMTKILITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAP
NSYFFDSGPRELFISISILLPVIGIGIYPDFVFSLSVDKAEAILSNFFYR

mRNA from alignment at JX118217:1352..2854-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>JX118217.1-NDHD.m2 ID=JX118217.1-NDHD.m2; Name=NDHD; organism=Fragaria vesca subsp. vesca; type=mRNA; length=1503bp; location=Sequence derived from: JX118217:1352..2854- (Fragaria vesca subsp. vesca
ATGAATAATTTTCCTTGGTTAACGCTAGTTNNNNNNNNNNNNNNNNNNNN
NNNNNCCTTAATTTTCTTTCTTCCTCATNNNNNNNNNNNNNNNNNNNNNN
NNTATACTTTATGTATATGCATAATAGAACTCCTTCTAACAACCTATGCA
TTCAGTTATCGTTTCCAATTGGATGATCCGTTAATGCAACTAACGGAGAA
TTATAAATGGATCAATTTTTTTGATTTTTACTGGAGATTGGGAATAGATG
GAATTTCTATAGGACCCATTTTACTGACAGGATTTATTACAACTTTAGCT
ACTTTAGCGGCTTGGCCCGTTACTCGAGATTCCCGACTATTCCATTTCCT
AATGTTAGCAATGTATAGCGGTCAAATAGGACCATTTTCTTCTCAAGACC
TTTTACTTTTTTTCATCATGTGGGAGTTAGAATTAATTCCCGTTTATCTA
CTTCTATCCATGTGGGGGGGAAAGAAACGTTTGTATTCAGCTACAAAATT
TATTTTGTACACTGCCGGAGGTTCTGTTTTTTTATTAATAGGAGTTCTGG
GTATTGGTTTATACGGCTCCAATGAACCGACANNNAATTTTGAAACATCA
GCGAATCAATCATATCCTGTAGCACTGGAAATAATATTCTATATTGGATT
TCTTATTGCTTTTGCTGTCAAATCACCGATCATACCCCTACACACATGGT
TACCAGACACCCATGGAGAGGCACATTATAGTACTTGTATGCTTTTAGCC
GGAATCTTATTAAAAATGGGAGCGTATGGGTTGATTCGAATCAATATGGA
ATTATTACCCCACGCCCATTCTATATTTTCTCCCTGGTTGATGATAGTCG
GCACAATTCAAATTATCTATGCAGCTTTAACATCTCCTGGCCAGCGTAAT
TTAAAAAAAAGAATAGCCTATTCTTCTGTATCTCATATGGGTTTCATAAT
TATAGGAATTGGTTCTATAAGCGATACAGGGCTCAATGGGACTATTTTAC
AAATAATTTCTCACGGATTTATTGGCGCTGCGCTTTTTTTCTTGGCCGGA
ACGAGTTATGATAGAATACGACTTGTTTATCTCGACGAAATGGGCGGAAT
GGCTATCTCAATTCCAAAAATATTCACGACTTTCAGTATCTTATCAATGG
CTTCGCTTGCATTACCGGGCATGAGCGGTTTTGTTGCCGAATTGNNNNTT
TTTTTTGGAATACTTACTAGCCAAAAATATCTTTTAATGACAAAAATATT
AATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTCAT
TATCTATGTTACGCCAGATGTTCTATGGATACAAGCTTTTTAATGCCCCA
AATTCTTATTTTTTTGATTCTGGGCCGCGAGAGTTATTTATTTCGATTTC
TATCCTTTTACCTGTAATAGGTATTGGTATTTATCCCGATTTCGTTTTCT
CATTATCAGTTGACAAGGCCGAAGCTATTCTATCAAATTTTTTTTATAGA
TAG

Coding sequence (CDS) from alignment at JX118217:1352..2854-

>JX118217.1-NDHD.m2 ID=JX118217.1-NDHD.m2; Name=NDHD; organism=Fragaria vesca subsp. vesca; type=CDS; length=1503bp; location=Sequence derived from: JX118217:1352..2854- (Fragaria vesca subsp. vesca
ATGAATAATTTTCCTTGGTTAACGCTAGTTNNNNNNNNNNNNNNNNNNNN
NNNNNCCTTAATTTTCTTTCTTCCTCATNNNNNNNNNNNNNNNNNNNNNN
NNTATACTTTATGTATATGCATAATAGAACTCCTTCTAACAACCTATGCA
TTCAGTTATCGTTTCCAATTGGATGATCCGTTAATGCAACTAACGGAGAA
TTATAAATGGATCAATTTTTTTGATTTTTACTGGAGATTGGGAATAGATG
GAATTTCTATAGGACCCATTTTACTGACAGGATTTATTACAACTTTAGCT
ACTTTAGCGGCTTGGCCCGTTACTCGAGATTCCCGACTATTCCATTTCCT
AATGTTAGCAATGTATAGCGGTCAAATAGGACCATTTTCTTCTCAAGACC
TTTTACTTTTTTTCATCATGTGGGAGTTAGAATTAATTCCCGTTTATCTA
CTTCTATCCATGTGGGGGGGAAAGAAACGTTTGTATTCAGCTACAAAATT
TATTTTGTACACTGCCGGAGGTTCTGTTTTTTTATTAATAGGAGTTCTGG
GTATTGGTTTATACGGCTCCAATGAACCGACANNNAATTTTGAAACATCA
GCGAATCAATCATATCCTGTAGCACTGGAAATAATATTCTATATTGGATT
TCTTATTGCTTTTGCTGTCAAATCACCGATCATACCCCTACACACATGGT
TACCAGACACCCATGGAGAGGCACATTATAGTACTTGTATGCTTTTAGCC
GGAATCTTATTAAAAATGGGAGCGTATGGGTTGATTCGAATCAATATGGA
ATTATTACCCCACGCCCATTCTATATTTTCTCCCTGGTTGATGATAGTCG
GCACAATTCAAATTATCTATGCAGCTTTAACATCTCCTGGCCAGCGTAAT
TTAAAAAAAAGAATAGCCTATTCTTCTGTATCTCATATGGGTTTCATAAT
TATAGGAATTGGTTCTATAAGCGATACAGGGCTCAATGGGACTATTTTAC
AAATAATTTCTCACGGATTTATTGGCGCTGCGCTTTTTTTCTTGGCCGGA
ACGAGTTATGATAGAATACGACTTGTTTATCTCGACGAAATGGGCGGAAT
GGCTATCTCAATTCCAAAAATATTCACGACTTTCAGTATCTTATCAATGG
CTTCGCTTGCATTACCGGGCATGAGCGGTTTTGTTGCCGAATTGNNNNTT
TTTTTTGGAATACTTACTAGCCAAAAATATCTTTTAATGACAAAAATATT
AATTACTTTTGTAATGGCAATTGGAATGATATTAACTCCTATTTATTCAT
TATCTATGTTACGCCAGATGTTCTATGGATACAAGCTTTTTAATGCCCCA
AATTCTTATTTTTTTGATTCTGGGCCGCGAGAGTTATTTATTTCGATTTC
TATCCTTTTACCTGTAATAGGTATTGGTATTTATCCCGATTTCGTTTTCT
CATTATCAGTTGACAAGGCCGAAGCTATTCTATCAAATTTTTTTTATAGA
TAG