RPOC2, JX118006.1-RPOC2.m2 (mRNA) Fragaria corymbosa

Transcript Overview


Name	RPOC2
Unique Name	JX118006.1-RPOC2.m2
Type	mRNA
Organism	Fragaria corymbosa ()
Source	genbank
Product	RNA polymerase beta subunit

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
JX118006	region	JX118006:326..3050 -	NCBI Rosaceae gene and mRNA sequences	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
RPOC2	JX118006.1-RPOC2	Fragaria corymbosa	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
JX118006.1-RPOC2.m2-cds1	JX118006.1-RPOC2.m2-cds1	Fragaria corymbosa	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
RPOC2	JX118006.1-RPOC2.p2	Fragaria corymbosa	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	402238699
nuccore	JX118006.1

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at JX118006:326..3050-
coding sequence from alignment at JX118006:326..3050-

mRNA sequence

>JX118006.1-RPOC2.m2 ID=JX118006.1-RPOC2.m2; Name=RPOC2; organism=Fragaria corymbosa; type=mRNA; length=2725bp
ttcgtgcagattcagtgcagcccccccctcactccacaaggatcaagatc
aaacgaacgttcattctcttttgactgaaggacgatatttttctagtctt
tcagtaaataatgatcaagtgaaacacaaattttttggtttaaatctttc
tgataaaaaagaaagctgtattcctgattattcagaattgaatcaaatca
tatatacgagttattgtaatctcacatttcctactattcgccatgataat
tttttattgacaaagaagcgaagaaatagattcatcattccattccaatc
gattcaagaacaagagaaagaacggatgccccgtcccggtatttcgattg
aaatacctataaatggtataaatggtatttttcgtagaaatagtattctt
gcttatttcgacgatcctcaatacagaagaaagagttcgggaattactaa
atatggaaccgtagggttgcattcaatcctcaaaaaagaggatttaattg
agtaccgaggagtcaaagaatttaagccaaaataccaaacgaaattagat
cgattttttttcattcctgaggaagtgcatattttacccgagtcttcttc
cataatggtacggaacaatagtatcattgggatagatacacgaatcactt
taaatacaagaagcagagtcggtggcttggtccgaatggagagaaaaaaa
aaaaggattgaacttaaaatcttttctggagatatccattttcccggaga
gatggataagatattccgacacaatggcatcttgataccgccaggaacaa
attctaaggaatcaaaaaagcggaaaaattggatttatgtccaatggatc
acacccaccaggaaaaagtattttgttttggttcgacccgtaatcatata
tgaaattgtggatggtataaatttagcaacacttttccctcaggatccat
tgcgggaaagggataatctagagcttcgagttgtaaattatatactgtat
ggaaatggcaaaccaattcggggaatttctggcacgggtattcaactagt
tcggacctgtttaatcttgaactgggacaacaacaaaaaaagttcttcta
tcgaagaggcccgcgcttcctttgttgaagtaagtgcaaatggtctgatt
caagatttcctcagaatcaacttagtgaaatcccatactccgtatattcg
aaaaaggaatgatccgttaggttcaggattgatctctgataataggtcgg
gtcgtaccaatatcaatccattttattctatttattccaaggaaaggatt
caacaatcgcttagccaaaatcaaggaacttttcgtacgttgttgaatag
aagtaaggagtcccaatctttgataattttgtcatcatataattgttttc
aaatgagtccattcaacgatgtaaaatattacgatgggataaaagaatca
agtaaaagagatagggattccctaattcaaattacaaatttgttaggccc
tttaggaacagcctctcaaagtgatcttttttatccgttttaccatttac
taactcataatcatatttctttaactaaatatttatatttgcaactcgac
aatttaaaacagacttttcaagtatttaagtattatttaatggatgaaaa
cgggagaatttcgaattccgatccgtgcagtagcatgcttttgaatccat
ttaacttgaattggcattttctcgaccataattattgtgaggaaacatcc
acaataattagtctcgggcagtttatttgtgaaaatctatgtatagccaa
aaaaggatcgaccctaaaatcgggtcaagttatagttgttcaccttgact
ctttagtaataagatcggcgaagccttatttagctactccgggagcaaca
gttcatggacattatggagaaatactttccgaaggagatacattagttac
atttatatatgaaaaatctagatctggtgatataacgcaaggccttccaa
aagtagaacaggttttagaggtacgttccattgattcaatatcgatgaac
ctagaaaagagagttgacggttggaatgagtgtataacaagaattcttgg
aattccttggggattcttgattggtgctgagctcactatagcgcaaagtc
gtatctctttggttaataagatccaaaaggtttatagatcccagggggta
cagatccataataggcatatcgaaatcattgtacgtcaaataacatcaaa
agtgttggtttcagaagatggaatgtctaatgttttttcacccggagaac
taattgggttgttgcgagctgaacgaacggggcgtgctttagaagaagct
atttgttaccgagccatattattaggaataacgaaagcatctctaaatac
tcaaagtttcatatccgaagcaagttttcaagaaactgctcgagttttag
caaaagctgccctccggggtcgtatcgattggttgaaaggtctgaaagag
aacgttgttctaggagggatgatacccgtcggtaccggattcaaaggatt
cgtgcaccgttcaaggcaacataacaacatttctttggaaagcaaaaata
agagtttattcgagggggaaatgagagatattttggtccaccacagagaa
ttatttgatttttgcatttcaaaaaatttacatgatacatcagaacaatc
ttttttcggatttaatgattcctaa

protein sequence of RPOC2

>JX118006.1-RPOC2.p2 ID=JX118006.1-RPOC2.p2; Name=RPOC2; organism=Fragaria corymbosa; type=polypeptide; length=907bp
SCRFSAAPPSLHKDQDQTNVHSLLTEGRYFSSLSVNNDQVKHKFFGLNLS
DKKESCIPDYSELNQIIYTSYCNLTFPTIRHDNFLLTKKRRNRFIIPFQS
IQEQEKERMPRPGISIEIPINGINGIFRRNSILAYFDDPQYRRKSSGITK
YGTVGLHSILKKEDLIEYRGVKEFKPKYQTKLDRFFFIPEEVHILPESSS
IMVRNNSIIGIDTRITLNTRSRVGGLVRMERKKKRIELKIFSGDIHFPGE
MDKIFRHNGILIPPGTNSKESKKRKNWIYVQWITPTRKKYFVLVRPVIIY
EIVDGINLATLFPQDPLRERDNLELRVVNYILYGNGKPIRGISGTGIQLV
RTCLILNWDNNKKSSSIEEARASFVEVSANGLIQDFLRINLVKSHTPYIR
KRNDPLGSGLISDNRSGRTNINPFYSIYSKERIQQSLSQNQGTFRTLLNR
SKESQSLIILSSYNCFQMSPFNDVKYYDGIKESSKRDRDSLIQITNLLGP
LGTASQSDLFYPFYHLLTHNHISLTKYLYLQLDNLKQTFQVFKYYLMDEN
GRISNSDPCSSMLLNPFNLNWHFLDHNYCEETSTIISLGQFICENLCIAK
KGSTLKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVT
FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDGWNECITRILG
IPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSK
VLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITKASLNT
QSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGF
VHRSRQHNNISLESKNKSLFEGEMRDILVHHRELFDFCISKNLHDTSEQS
FFGFNDS

mRNA from alignment at JX118006:326..3050-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>JX118006.1-RPOC2.m2 ID=JX118006.1-RPOC2.m2; Name=RPOC2; organism=Fragaria corymbosa; type=mRNA; length=2725bp; location=Sequence derived from: JX118006:326..3050- (Fragaria corymbosa
TTCGTGCAGATTCAGTGCAGCCCCCCCCTCACTCCACAAGGATCAAGATC
AAACGAACGTTCATTCTCTTTTGACTGAAGGACGATATTTTTCTAGTCTT
TCAGTAAATAATGATCAAGTGAAACACAAATTTTTTGGTTTAAATCTTTC
TGATAAAAAAGAAAGCTGTATTCCTGATTATTCAGAATTGAATCAAATCA
TATATACGAGTTATTGTAATCTCACATTTCCTACTATTCGCCATGATAAT
TTTTTATTGACAAAGAAGCGAAGAAATAGATTCATCATTCCATTCCAATC
GATTCAAGAACAAGAGAAAGAACGGATGCCCCGTCCCGGTATTTCGATTG
AAATACCTATAAATGGTATAAATGGTATTTTTCGTAGAAATAGTATTCTT
GCTTATTTCGACGATCCTCAATACAGAAGAAAGAGTTCGGGAATTACTAA
ATATGGAACCGTAGGGTTGCATTCAATCCTCAAAAAAGAGGATTTAATTG
AGTACCGAGGAGTCAAAGAATTTAAGCCAAAATACCAAACGAAATTAGAT
CGATTTTTTTTCATTCCTGAGGAAGTGCATATTTTACCCGAGTCTTCTTC
CATAATGGTACGGAACAATAGTATCATTGGGATAGATACACGAATCACTT
TAAATACAAGAAGCAGAGTCGGTGGCTTGGTCCGAATGGAGAGAAAAAAA
AAAAGGATTGAACTTAAAATCTTTTCTGGAGATATCCATTTTCCCGGAGA
GATGGATAAGATATTCCGACACAATGGCATCTTGATACCGCCAGGAACAA
ATTCTAAGGAATCAAAAAAGCGGAAAAATTGGATTTATGTCCAATGGATC
ACACCCACCAGGAAAAAGTATTTTGTTTTGGTTCGACCCGTAATCATATA
TGAAATTGTGGATGGTATAAATTTAGCAACACTTTTCCCTCAGGATCCAT
TGCGGGAAAGGGATAATCTAGAGCTTCGAGTTGTAAATTATATACTGTAT
GGAAATGGCAAACCAATTCGGGGAATTTCTGGCACGGGTATTCAACTAGT
TCGGACCTGTTTAATCTTGAACTGGGACAACAACAAAAAAAGTTCTTCTA
TCGAAGAGGCCCGCGCTTCCTTTGTTGAAGTAAGTGCAAATGGTCTGATT
CAAGATTTCCTCAGAATCAACTTAGTGAAATCCCATACTCCGTATATTCG
AAAAAGGAATGATCCGTTAGGTTCAGGATTGATCTCTGATAATAGGTCGG
GTCGTACCAATATCAATCCATTTTATTCTATTTATTCCAAGGAAAGGATT
CAACAATCGCTTAGCCAAAATCAAGGAACTTTTCGTACGTTGTTGAATAG
AAGTAAGGAGTCCCAATCTTTGATAATTTTGTCATCATATAATTGTTTTC
AAATGAGTCCATTCAACGATGTAAAATATTACGATGGGATAAAAGAATCA
AGTAAAAGAGATAGGGATTCCCTAATTCAAATTACAAATTTGTTAGGCCC
TTTAGGAACAGCCTCTCAAAGTGATCTTTTTTATCCGTTTTACCATTTAC
TAACTCATAATCATATTTCTTTAACTAAATATTTATATTTGCAACTCGAC
AATTTAAAACAGACTTTTCAAGTATTTAAGTATTATTTAATGGATGAAAA
CGGGAGAATTTCGAATTCCGATCCGTGCAGTAGCATGCTTTTGAATCCAT
TTAACTTGAATTGGCATTTTCTCGACCATAATTATTGTGAGGAAACATCC
ACAATAATTAGTCTCGGGCAGTTTATTTGTGAAAATCTATGTATAGCCAA
AAAAGGATCGACCCTAAAATCGGGTCAAGTTATAGTTGTTCACCTTGACT
CTTTAGTAATAAGATCGGCGAAGCCTTATTTAGCTACTCCGGGAGCAACA
GTTCATGGACATTATGGAGAAATACTTTCCGAAGGAGATACATTAGTTAC
ATTTATATATGAAAAATCTAGATCTGGTGATATAACGCAAGGCCTTCCAA
AAGTAGAACAGGTTTTAGAGGTACGTTCCATTGATTCAATATCGATGAAC
CTAGAAAAGAGAGTTGACGGTTGGAATGAGTGTATAACAAGAATTCTTGG
AATTCCTTGGGGATTCTTGATTGGTGCTGAGCTCACTATAGCGCAAAGTC
GTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATAGATCCCAGGGGGTA
CAGATCCATAATAGGCATATCGAAATCATTGTACGTCAAATAACATCAAA
AGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCCGGAGAAC
TAATTGGGTTGTTGCGAGCTGAACGAACGGGGCGTGCTTTAGAAGAAGCT
ATTTGTTACCGAGCCATATTATTAGGAATAACGAAAGCATCTCTAAATAC
TCAAAGTTTCATATCCGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAG
CAAAAGCTGCCCTCCGGGGTCGTATCGATTGGTTGAAAGGTCTGAAAGAG
AACGTTGTTCTAGGAGGGATGATACCCGTCGGTACCGGATTCAAAGGATT
CGTGCACCGTTCAAGGCAACATAACAACATTTCTTTGGAAAGCAAAAATA
AGAGTTTATTCGAGGGGGAAATGAGAGATATTTTGGTCCACCACAGAGAA
TTATTTGATTTTTGCATTTCAAAAAATTTACATGATACATCAGAACAATC
TTTTTTCGGATTTAATGATTCCTAA

Coding sequence (CDS) from alignment at JX118006:326..3050-

>JX118006.1-RPOC2.m2 ID=JX118006.1-RPOC2.m2; Name=RPOC2; organism=Fragaria corymbosa; type=CDS; length=2725bp; location=Sequence derived from: JX118006:326..3050- (Fragaria corymbosa
TTCGTGCAGATTCAGTGCAGCCCCCCCCTCACTCCACAAGGATCAAGATC
AAACGAACGTTCATTCTCTTTTGACTGAAGGACGATATTTTTCTAGTCTT
TCAGTAAATAATGATCAAGTGAAACACAAATTTTTTGGTTTAAATCTTTC
TGATAAAAAAGAAAGCTGTATTCCTGATTATTCAGAATTGAATCAAATCA
TATATACGAGTTATTGTAATCTCACATTTCCTACTATTCGCCATGATAAT
TTTTTATTGACAAAGAAGCGAAGAAATAGATTCATCATTCCATTCCAATC
GATTCAAGAACAAGAGAAAGAACGGATGCCCCGTCCCGGTATTTCGATTG
AAATACCTATAAATGGTATAAATGGTATTTTTCGTAGAAATAGTATTCTT
GCTTATTTCGACGATCCTCAATACAGAAGAAAGAGTTCGGGAATTACTAA
ATATGGAACCGTAGGGTTGCATTCAATCCTCAAAAAAGAGGATTTAATTG
AGTACCGAGGAGTCAAAGAATTTAAGCCAAAATACCAAACGAAATTAGAT
CGATTTTTTTTCATTCCTGAGGAAGTGCATATTTTACCCGAGTCTTCTTC
CATAATGGTACGGAACAATAGTATCATTGGGATAGATACACGAATCACTT
TAAATACAAGAAGCAGAGTCGGTGGCTTGGTCCGAATGGAGAGAAAAAAA
AAAAGGATTGAACTTAAAATCTTTTCTGGAGATATCCATTTTCCCGGAGA
GATGGATAAGATATTCCGACACAATGGCATCTTGATACCGCCAGGAACAA
ATTCTAAGGAATCAAAAAAGCGGAAAAATTGGATTTATGTCCAATGGATC
ACACCCACCAGGAAAAAGTATTTTGTTTTGGTTCGACCCGTAATCATATA
TGAAATTGTGGATGGTATAAATTTAGCAACACTTTTCCCTCAGGATCCAT
TGCGGGAAAGGGATAATCTAGAGCTTCGAGTTGTAAATTATATACTGTAT
GGAAATGGCAAACCAATTCGGGGAATTTCTGGCACGGGTATTCAACTAGT
TCGGACCTGTTTAATCTTGAACTGGGACAACAACAAAAAAAGTTCTTCTA
TCGAAGAGGCCCGCGCTTCCTTTGTTGAAGTAAGTGCAAATGGTCTGATT
CAAGATTTCCTCAGAATCAACTTAGTGAAATCCCATACTCCGTATATTCG
AAAAAGGAATGATCCGTTAGGTTCAGGATTGATCTCTGATAATAGGTCGG
GTCGTACCAATATCAATCCATTTTATTCTATTTATTCCAAGGAAAGGATT
CAACAATCGCTTAGCCAAAATCAAGGAACTTTTCGTACGTTGTTGAATAG
AAGTAAGGAGTCCCAATCTTTGATAATTTTGTCATCATATAATTGTTTTC
AAATGAGTCCATTCAACGATGTAAAATATTACGATGGGATAAAAGAATCA
AGTAAAAGAGATAGGGATTCCCTAATTCAAATTACAAATTTGTTAGGCCC
TTTAGGAACAGCCTCTCAAAGTGATCTTTTTTATCCGTTTTACCATTTAC
TAACTCATAATCATATTTCTTTAACTAAATATTTATATTTGCAACTCGAC
AATTTAAAACAGACTTTTCAAGTATTTAAGTATTATTTAATGGATGAAAA
CGGGAGAATTTCGAATTCCGATCCGTGCAGTAGCATGCTTTTGAATCCAT
TTAACTTGAATTGGCATTTTCTCGACCATAATTATTGTGAGGAAACATCC
ACAATAATTAGTCTCGGGCAGTTTATTTGTGAAAATCTATGTATAGCCAA
AAAAGGATCGACCCTAAAATCGGGTCAAGTTATAGTTGTTCACCTTGACT
CTTTAGTAATAAGATCGGCGAAGCCTTATTTAGCTACTCCGGGAGCAACA
GTTCATGGACATTATGGAGAAATACTTTCCGAAGGAGATACATTAGTTAC
ATTTATATATGAAAAATCTAGATCTGGTGATATAACGCAAGGCCTTCCAA
AAGTAGAACAGGTTTTAGAGGTACGTTCCATTGATTCAATATCGATGAAC
CTAGAAAAGAGAGTTGACGGTTGGAATGAGTGTATAACAAGAATTCTTGG
AATTCCTTGGGGATTCTTGATTGGTGCTGAGCTCACTATAGCGCAAAGTC
GTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATAGATCCCAGGGGGTA
CAGATCCATAATAGGCATATCGAAATCATTGTACGTCAAATAACATCAAA
AGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCCGGAGAAC
TAATTGGGTTGTTGCGAGCTGAACGAACGGGGCGTGCTTTAGAAGAAGCT
ATTTGTTACCGAGCCATATTATTAGGAATAACGAAAGCATCTCTAAATAC
TCAAAGTTTCATATCCGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAG
CAAAAGCTGCCCTCCGGGGTCGTATCGATTGGTTGAAAGGTCTGAAAGAG
AACGTTGTTCTAGGAGGGATGATACCCGTCGGTACCGGATTCAAAGGATT
CGTGCACCGTTCAAGGCAACATAACAACATTTCTTTGGAAAGCAAAAATA
AGAGTTTATTCGAGGGGGAAATGAGAGATATTTTGGTCCACCACAGAGAA
TTATTTGATTTTTGCATTTCAAAAAATTTACATGATACATCAGAACAATC
TTTTTTCGGATTTAATGATTCCTAA