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Transcript Overview
| Name | CMT3B |
|---|
| Unique Name | JX575803.1-CMT3B.m1 |
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| Type | mRNA |
|---|
| Organism | Malus x domestica (Apple) |
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| Source | genbank |
|---|
| Product | CMT-type cytosine DNA-methyltransferase 3b |
|---|
| Genbank Note | MdCMT3b |
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Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| JX575803.1-CMT3B.m1-cds1 | JX575803.1-CMT3B.m1-cds1 | Malus x domestica | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMT3B | JX575803.1-CMT3B.p1 | Malus x domestica | polypeptide |
Cross References
External references for this mRNA
Alignments
| Feature Name | Type | Location | Analysis |
|---|
| JX575803 |
region |
JX575803:1..3291+ |
NCBI Rosaceae gene and mRNA sequences |
| Chr03 |
chromosome |
Chr03:821688..832186- |
Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation |
| chr13 |
chromosome |
chr13:9199256..9209757+ |
Malus x domestica Whole Genome v1.0 Assembly & Annotation |
| chr13 |
chromosome |
chr13:9388044..9398545+ |
Malus x domestica Whole Genome v1.0p Assembly & Annotation |
Sequences
The
following sequences are available for this feature:
mRNA sequence >JX575803.1-CMT3B.m1 ID=JX575803.1-CMT3B.m1; Name=CMT3B; organism=Malus x domestica; type=mRNA; length=3291bp
atgaacygtgttgttaatcattcttatgatcagttcttaaagccctttct
ctctatacttatggcaaagacaatccaactactcaaagtttttataatta
gtccggatgatcataatcgcgwctgcgaacaagatctagaagctgcaatg
caacaggttgcagacaagactaattcgattgggctagcgcttcttcccgt
tcaaattcactctrgccacctccctgtaatcttttactttcttggactat
cagtcttgcttgccttcacttgtatcttgttccaccgtcttctccggcca
ttcagcccctctccgctctctctctgcgccgtacgccgaatggcttgcaa
gcggaaggcgaaggccggaacctcttcaggttctcccccggaatcgaaga
agctgaggcwaaccgaggaggcgagagttgaagaggaggtagcaacgact
gtggataaagctgcttctccgccgaggaaccctgtgactcaggaggtagc
tgcggctgaygatgacggagaggaagcgaggtttcttggcgaaccgatgg
aagacgaggaggctcgtaagcaataccccaagagatatgttggaaagaag
ccaaagatgaatgggcaaaacaactccaacgatgatgaagatataattca
agctcgttgtcactacacaaaggcgttggtagatggaatcaattatgacc
tctatgatgatgcccattcaggggagaaagaagagccatacatttgtaag
attgtggaaatgtttgaggcaattggtgggctattgtattttactgcaca
atggtactatagatcacgagacactgtcataaagcactgtactactgttg
cttgtgggcgtgtattcttttcagatgtccgagacgataaccctctgaat
tgtcttgttgaaaaacttcatattgttagactgacactaaatgttgatga
agatttgaagagtaaatcaattccrgtgtgcaattactattgtgacacca
agtacctgctaccgtattctacttttgtcaatctgcyggcagaaaatatg
cagactggaagtgatgactcaactatctctgttgaggatgatgtttgttt
ggatagcgaggttgattcaaagctgccaaatggagagcgtgccaaatcag
aagtaaggctcttagacctatattctggttgcggagcgatgtctactggc
ctgtgccttggtgcacatttggccaatgtcaatcttgttacaagatgggc
tgttgactacaataagtacgcttgtaagagtttggcacaaaaccatccag
agacagaggttcgaaatgaagctgctgaagattttctcacaatgctcaag
gcatggagaaaactatgcatgtgtttaaagttggttgagaatgacaattt
agaggaggatgtagayaagagtatacttgatttctttggaaaggaagatg
atgaagaggaagaggaggatgaagaagaggaagatgttagtggaaatgtc
aagaatgattctgaagtttttgaagttgattgcgtcataggagtatgttt
tggtgacccmaaaaaaacagaaaagaagggaatatactttaagattcatt
ggaagggctacgggcctgmggargacacctgggagccaatgaatgaattg
gagcattgtaagcaggctatcaaaaaatttattactgaaggttacagatt
gaaaaaattgcctttaccgggtgatgttgatgtggtgtgtgggggacccc
cttgccaaggagttagtggtttcaacagatttaggaacacagaragtcca
ttagcagatgacaaaaaccaacagttrgaggtgtacatggacatagttcg
gtacctaargccaaaatttgttttratggaaaaygttgtygatattttaa
aatttgccgatggattccttggrcgatatgccttgggacgccttgtagat
atgaactatcaagtgaggatgggaatgatggcagcaggtgcatatgggct
tccgcagttccgtatgcgagtttttttgtggggggcgcgtcctactgaga
tcttgccccagtacccacttcctacacatgacgttgtttcaaggggtgtt
actcctacacagtttgagggkaatgcygttgcttatgatgaaggtcatca
gacccaattaggaaaaagtctttttctggatgatgcgatttccgatctgc
ctgctgttgcaaataatgaagaaagagacgagatgccttatggggtggca
cccaagacagagtttcagaggcttatwagactaagcaaagaatacctaat
ggggacttcaaaggacaactctatacaaaacgttctttatgatcatcgcc
ctcttcagttgaatcccgatgattatgcacgtgtttgtgaagttcccaag
agaaagggtgcatgcttcagagatcttccaggtgttcgtgtgcgtggtga
taacaaggttgagtgggatccmgaagtacccagggtgtatttggcttctg
gsaaaccgttgatcccagattatgctatgagtttygtgaatgggtcttca
tcgaaaccttttgcccgtttgtggtgggaygaaactgtrccaacagtggt
cacaagagctgaacctcataaccargcaattatgcaycckgaacaagata
gggtgctgacaattcgtgagaatgccaggctacaaggctttcsggatttt
tacaagctcagcgggcctataaaagaaaggtacatgcaggttggaaatgc
tgttgctgttcctgttgcgcgtgcactgggctatgcattaggtcttgctc
ttaagggttctgctggtgctgatcccctktttawactgcctgcaaatttc
cctaaccttcaagatcagtgcactgtacacacctcgttccaccagagtaa
ctacataaaggctttcactctctgcacrcttcactatttgctcatggctt
cagcttccagatcaagcwcttggcttttcagtctgtcggagaattggctc
ccaatggctactataatattcgcttgcgggtttgtcggttacgctgttta
cgacgcagtgatggccaccgtgtctgagctgctgcaacgtttgttggtaa
tttctcctttacttatagtcattgtagttcattggctctccacaggcagc
caagttaacattagcattccggggtcggagcccggagccatccatagagc
cgggggatcgccttggggtgtggcctttgtactatttctgctcttctttc
tcatatcttaccagccttccttgcatggccttcttttctag back to topprotein sequence of CMT3B >JX575803.1-CMT3B.p1 ID=JX575803.1-CMT3B.p1; Name=CMT3B; organism=Malus x domestica; type=polypeptide; length=1096bp
MNXVVNHSYDQFLKPFLSILMAKTIQLLKVFIISPDDHNRXCEQDLEAAM
QQVADKTNSIGLALLPVQIHSXHLPVIFYFLGLSVLLAFTCILFHRLLRP
FSPSPLSLCAVRRMACKRKAKAGTSSGSPPESKKLRXTEEARVEEEVATT
VDKAASPPRNPVTQEVAAADDDGEEARFLGEPMEDEEARKQYPKRYVGKK
PKMNGQNNSNDDEDIIQARCHYTKALVDGINYDLYDDAHSGEKEEPYICK
IVEMFEAIGGLLYFTAQWYYRSRDTVIKHCTTVACGRVFFSDVRDDNPLN
CLVEKLHIVRLTLNVDEDLKSKSIPVCNYYCDTKYLLPYSTFVNLXAENM
QTGSDDSTISVEDDVCLDSEVDSKLPNGERAKSEVRLLDLYSGCGAMSTG
LCLGAHLANVNLVTRWAVDYNKYACKSLAQNHPETEVRNEAAEDFLTMLK
AWRKLCMCLKLVENDNLEEDVDKSILDFFGKEDDEEEEEDEEEEDVSGNV
KNDSEVFEVDCVIGVCFGDPKKTEKKGIYFKIHWKGYGPXEDTWEPMNEL
EHCKQAIKKFITEGYRLKKLPLPGDVDVVCGGPPCQGVSGFNRFRNTESP
LADDKNQQLEVYMDIVRYLXPKFVLMENVVDILKFADGFLGRYALGRLVD
MNYQVRMGMMAAGAYGLPQFRMRVFLWGARPTEILPQYPLPTHDVVSRGV
TPTQFEGNAVAYDEGHQTQLGKSLFLDDAISDLPAVANNEERDEMPYGVA
PKTEFQRLIRLSKEYLMGTSKDNSIQNVLYDHRPLQLNPDDYARVCEVPK
RKGACFRDLPGVRVRGDNKVEWDPEVPRVYLASGKPLIPDYAMSFVNGSS
SKPFARLWWDETVPTVVTRAEPHNQAIMHPEQDRVLTIRENARLQGFXDF
YKLSGPIKERYMQVGNAVAVPVARALGYALGLALKGSAGADPLFXLPANF
PNLQDQCTVHTSFHQSNYIKAFTLCTLHYLLMASASRSSXWLFSLSENWL
PMATIIFACGFVGYAVYDAVMATVSELLQRLLVISPLLIVIVVHWLSTGS
QVNISIPGSEPGAIHRAGGSPWGVAFVLFLLFFLISYQPSLHGLLF back to topmRNA from alignment at JX575803:1..3291+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >JX575803.1-CMT3B.m1 ID=JX575803.1-CMT3B.m1; Name=CMT3B; organism=Malus x domestica; type=mRNA; length=3291bp; location=Sequence derived from: JX575803:1..3291+ (Malus x domestica
atgaacygtgttgttaatcattcttatgatcagttcttaaagccctttct
ctctatacttatggcaaagacaatccaactactcaaagtttttataatta
gtccggatgatcataatcgcgwctgcgaacaagatctagaagctgcaatg
caacaggttgcagacaagactaattcgattgggctagcgcttcttcccgt
tcaaattcactctrgccacctccctgtaatcttttactttcttggactat
cagtcttgcttgccttcacttgtatcttgttccaccgtcttctccggcca
ttcagcccctctccgctctctctctgcgccgtacgccgaatggcttgcaa
gcggaaggcgaaggccggaacctcttcaggttctcccccggaatcgaaga
agctgaggcwaaccgaggaggcgagagttgaagaggaggtagcaacgact
gtggataaagctgcttctccgccgaggaaccctgtgactcaggaggtagc
tgcggctgaygatgacggagaggaagcgaggtttcttggcgaaccgatgg
aagacgaggaggctcgtaagcaataccccaagagatatgttggaaagaag
ccaaagatgaatgggcaaaacaactccaacgatgatgaagatataattca
agctcgttgtcactacacaaaggcgttggtagatggaatcaattatgacc
tctatgatgatgcccattcaggggagaaagaagagccatacatttgtaag
attgtggaaatgtttgaggcaattggtgggctattgtattttactgcaca
atggtactatagatcacgagacactgtcataaagcactgtactactgttg
cttgtgggcgtgtattcttttcagatgtccgagacgataaccctctgaat
tgtcttgttgaaaaacttcatattgttagactgacactaaatgttgatga
agatttgaagagtaaatcaattccrgtgtgcaattactattgtgacacca
agtacctgctaccgtattctacttttgtcaatctgcyggcagaaaatatg
cagactggaagtgatgactcaactatctctgttgaggatgatgtttgttt
ggatagcgaggttgattcaaagctgccaaatggagagcgtgccaaatcag
aagtaaggctcttagacctatattctggttgcggagcgatgtctactggc
ctgtgccttggtgcacatttggccaatgtcaatcttgttacaagatgggc
tgttgactacaataagtacgcttgtaagagtttggcacaaaaccatccag
agacagaggttcgaaatgaagctgctgaagattttctcacaatgctcaag
gcatggagaaaactatgcatgtgtttaaagttggttgagaatgacaattt
agaggaggatgtagayaagagtatacttgatttctttggaaaggaagatg
atgaagaggaagaggaggatgaagaagaggaagatgttagtggaaatgtc
aagaatgattctgaagtttttgaagttgattgcgtcataggagtatgttt
tggtgacccmaaaaaaacagaaaagaagggaatatactttaagattcatt
ggaagggctacgggcctgmggargacacctgggagccaatgaatgaattg
gagcattgtaagcaggctatcaaaaaatttattactgaaggttacagatt
gaaaaaattgcctttaccgggtgatgttgatgtggtgtgtgggggacccc
cttgccaaggagttagtggtttcaacagatttaggaacacagaragtcca
ttagcagatgacaaaaaccaacagttrgaggtgtacatggacatagttcg
gtacctaargccaaaatttgttttratggaaaaygttgtygatattttaa
aatttgccgatggattccttggrcgatatgccttgggacgccttgtagat
atgaactatcaagtgaggatgggaatgatggcagcaggtgcatatgggct
tccgcagttccgtatgcgagtttttttgtggggggcgcgtcctactgaga
tcttgccccagtacccacttcctacacatgacgttgtttcaaggggtgtt
actcctacacagtttgagggkaatgcygttgcttatgatgaaggtcatca
gacccaattaggaaaaagtctttttctggatgatgcgatttccgatctgc
ctgctgttgcaaataatgaagaaagagacgagatgccttatggggtggca
cccaagacagagtttcagaggcttatwagactaagcaaagaatacctaat
ggggacttcaaaggacaactctatacaaaacgttctttatgatcatcgcc
ctcttcagttgaatcccgatgattatgcacgtgtttgtgaagttcccaag
agaaagggtgcatgcttcagagatcttccaggtgttcgtgtgcgtggtga
taacaaggttgagtgggatccmgaagtacccagggtgtatttggcttctg
gsaaaccgttgatcccagattatgctatgagtttygtgaatgggtcttca
tcgaaaccttttgcccgtttgtggtgggaygaaactgtrccaacagtggt
cacaagagctgaacctcataaccargcaattatgcaycckgaacaagata
gggtgctgacaattcgtgagaatgccaggctacaaggctttcsggatttt
tacaagctcagcgggcctataaaagaaaggtacatgcaggttggaaatgc
tgttgctgttcctgttgcgcgtgcactgggctatgcattaggtcttgctc
ttaagggttctgctggtgctgatcccctktttawactgcctgcaaatttc
cctaaccttcaagatcagtgcactgtacacacctcgttccaccagagtaa
ctacataaaggctttcactctctgcacrcttcactatttgctcatggctt
cagcttccagatcaagcwcttggcttttcagtctgtcggagaattggctc
ccaatggctactataatattcgcttgcgggtttgtcggttacgctgttta
cgacgcagtgatggccaccgtgtctgagctgctgcaacgtttgttggtaa
tttctcctttacttatagtcattgtagttcattggctctccacaggcagc
caagttaacattagcattccggggtcggagcccggagccatccatagagc
cgggggatcgccttggggtgtggcctttgtactatttctgctcttctttc
tcatatcttaccagccttccttgcatggccttcttttctag back to topCoding sequence (CDS) from alignment at JX575803:1..3291+ >JX575803.1-CMT3B.m1 ID=JX575803.1-CMT3B.m1; Name=CMT3B; organism=Malus x domestica; type=CDS; length=3291bp; location=Sequence derived from: JX575803:1..3291+ (Malus x domestica
atgaacygtgttgttaatcattcttatgatcagttcttaaagccctttct
ctctatacttatggcaaagacaatccaactactcaaagtttttataatta
gtccggatgatcataatcgcgwctgcgaacaagatctagaagctgcaatg
caacaggttgcagacaagactaattcgattgggctagcgcttcttcccgt
tcaaattcactctrgccacctccctgtaatcttttactttcttggactat
cagtcttgcttgccttcacttgtatcttgttccaccgtcttctccggcca
ttcagcccctctccgctctctctctgcgccgtacgccgaatggcttgcaa
gcggaaggcgaaggccggaacctcttcaggttctcccccggaatcgaaga
agctgaggcwaaccgaggaggcgagagttgaagaggaggtagcaacgact
gtggataaagctgcttctccgccgaggaaccctgtgactcaggaggtagc
tgcggctgaygatgacggagaggaagcgaggtttcttggcgaaccgatgg
aagacgaggaggctcgtaagcaataccccaagagatatgttggaaagaag
ccaaagatgaatgggcaaaacaactccaacgatgatgaagatataattca
agctcgttgtcactacacaaaggcgttggtagatggaatcaattatgacc
tctatgatgatgcccattcaggggagaaagaagagccatacatttgtaag
attgtggaaatgtttgaggcaattggtgggctattgtattttactgcaca
atggtactatagatcacgagacactgtcataaagcactgtactactgttg
cttgtgggcgtgtattcttttcagatgtccgagacgataaccctctgaat
tgtcttgttgaaaaacttcatattgttagactgacactaaatgttgatga
agatttgaagagtaaatcaattccrgtgtgcaattactattgtgacacca
agtacctgctaccgtattctacttttgtcaatctgcyggcagaaaatatg
cagactggaagtgatgactcaactatctctgttgaggatgatgtttgttt
ggatagcgaggttgattcaaagctgccaaatggagagcgtgccaaatcag
aagtaaggctcttagacctatattctggttgcggagcgatgtctactggc
ctgtgccttggtgcacatttggccaatgtcaatcttgttacaagatgggc
tgttgactacaataagtacgcttgtaagagtttggcacaaaaccatccag
agacagaggttcgaaatgaagctgctgaagattttctcacaatgctcaag
gcatggagaaaactatgcatgtgtttaaagttggttgagaatgacaattt
agaggaggatgtagayaagagtatacttgatttctttggaaaggaagatg
atgaagaggaagaggaggatgaagaagaggaagatgttagtggaaatgtc
aagaatgattctgaagtttttgaagttgattgcgtcataggagtatgttt
tggtgacccmaaaaaaacagaaaagaagggaatatactttaagattcatt
ggaagggctacgggcctgmggargacacctgggagccaatgaatgaattg
gagcattgtaagcaggctatcaaaaaatttattactgaaggttacagatt
gaaaaaattgcctttaccgggtgatgttgatgtggtgtgtgggggacccc
cttgccaaggagttagtggtttcaacagatttaggaacacagaragtcca
ttagcagatgacaaaaaccaacagttrgaggtgtacatggacatagttcg
gtacctaargccaaaatttgttttratggaaaaygttgtygatattttaa
aatttgccgatggattccttggrcgatatgccttgggacgccttgtagat
atgaactatcaagtgaggatgggaatgatggcagcaggtgcatatgggct
tccgcagttccgtatgcgagtttttttgtggggggcgcgtcctactgaga
tcttgccccagtacccacttcctacacatgacgttgtttcaaggggtgtt
actcctacacagtttgagggkaatgcygttgcttatgatgaaggtcatca
gacccaattaggaaaaagtctttttctggatgatgcgatttccgatctgc
ctgctgttgcaaataatgaagaaagagacgagatgccttatggggtggca
cccaagacagagtttcagaggcttatwagactaagcaaagaatacctaat
ggggacttcaaaggacaactctatacaaaacgttctttatgatcatcgcc
ctcttcagttgaatcccgatgattatgcacgtgtttgtgaagttcccaag
agaaagggtgcatgcttcagagatcttccaggtgttcgtgtgcgtggtga
taacaaggttgagtgggatccmgaagtacccagggtgtatttggcttctg
gsaaaccgttgatcccagattatgctatgagtttygtgaatgggtcttca
tcgaaaccttttgcccgtttgtggtgggaygaaactgtrccaacagtggt
cacaagagctgaacctcataaccargcaattatgcaycckgaacaagata
gggtgctgacaattcgtgagaatgccaggctacaaggctttcsggatttt
tacaagctcagcgggcctataaaagaaaggtacatgcaggttggaaatgc
tgttgctgttcctgttgcgcgtgcactgggctatgcattaggtcttgctc
ttaagggttctgctggtgctgatcccctktttawactgcctgcaaatttc
cctaaccttcaagatcagtgcactgtacacacctcgttccaccagagtaa
ctacataaaggctttcactctctgcacrcttcactatttgctcatggctt
cagcttccagatcaagcwcttggcttttcagtctgtcggagaattggctc
ccaatggctactataatattcgcttgcgggtttgtcggttacgctgttta
cgacgcagtgatggccaccgtgtctgagctgctgcaacgtttgttggtaa
tttctcctttacttatagtcattgtagttcattggctctccacaggcagc
caagttaacattagcattccggggtcggagcccggagccatccatagagc
cgggggatcgccttggggtgtggcctttgtactatttctgctcttctttc
tcatatcttaccagccttccttgcatggccttcttttctag back to top
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