COL14, HM122530.1-COL14.m1 (mRNA) Malus x domestica

Transcript Overview


Name	COL14
Unique Name	HM122530.1-COL14.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	COL domain class transcription factor

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
HM122530.1-COL14.m1-cds1	HM122530.1-COL14.m1-cds1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
COL14	HM122530.1-COL14.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	302398749
nuccore	HM122530.1

Alignments

Feature Name	Type	Location	Analysis
HM122530	region	HM122530:196..1650+	NCBI Rosaceae gene and mRNA sequences
Chr13	chromosome	Chr13:9323154..9325751-	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr13	chromosome	chr13:8847122..8849719+	Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr13	chromosome	chr13:8847401..8849998-	Malus x domestica Whole Genome v1.0p Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at HM122530:196..1650+
coding sequence from alignment at HM122530:196..1650+

mRNA sequence

>HM122530.1-COL14.m1 ID=HM122530.1-COL14.m1; Name=COL14; organism=Malus x domestica; type=mRNA; length=1455bp
atggtaagccccaaatctggaggtgtagagggggtgccctgcgatttctg
cagcgaccagccggcggttctctactgccgggcagactccgccaagctct
gcttgttctgcgaccagcacgtgcactccgctaacttgctttcccggaag
cacgtgcgctctcagatctgtgataattgctcttccgaggccgtctccgt
ccgctgctccaccgacaacctcgttctctgccaggagtgcgattgggacg
cccacggcagctgctctgtcactgccgcgcacgatcgcacccctctcgag
gggttctccggctgcccctcggcgctcgagctcgcgtctcttttgggtct
ggatctccaggataagaatctaccggctcgacccgacccgcagctccaga
actgggatatgggtttgccgtccgtggatccgtcttggaatgggtttggg
atgcaggacttgatggtgcccatccagaacggcgtcgttgacctgaccgg
tgatatgaagaggcagaatagtgggggtataagcgggaagcagaagcagg
ggatacagaagcagctgttggagttgcttaagagggacttgggtggtggc
cgcggcggaggtggtagtggcagcgagaatttagtgccagggacgcagac
aaggaatggttggcaggaggagaatgggaagggaaatggggatgtggaag
ggcttgcttcgattgatgtgaggaatgagaatggaggtgttggtggggtt
gcagctcgtgctgcctctttggagacggtgttgcagcaacaaacaccctt
ttcgactatgctcatgatgccagaagagaatcgtgacggtgacatgttgt
gggatagcaacccccatggtcagactcagatatgggattttaatttagga
cggttgagggatcatgaagagtcaggtccattgaaagtcacatatggttc
aaacgtttcaggatttatgattaaagatttcagcgaacttatgaaagaat
catctttgactgatacaaaaatgttaagagatatctaccagatgaactcc
cctgttggacatgatgatataaaattcaatatcacctctaataacccaga
aggcagtctgggtccagcaacatccgaaagcaacaacgtccctatcggac
agccattatcagggtccgtgtttggcgatgacaaaggttctggtgcttct
aatgacatcagttttatggaacaatcttttcttatgaggggtgacagtat
cagtatgagaacggtaggaacaaaagcagacatggagttgcttgcacaaa
atagaggcaacgccatgcttcgttacaaagagaagaagaaaactcgaaga
tatgataagcacataaggtacgagtcaaggaaggcaagagctgatactag
gaagcgagtcaagggtcgatttgtgaaggctactaccgaatctcccgatg
gttag

protein sequence of COL14

>HM122530.1-COL14.p1 ID=HM122530.1-COL14.p1; Name=COL14; organism=Malus x domestica; type=polypeptide; length=484bp
MVSPKSGGVEGVPCDFCSDQPAVLYCRADSAKLCLFCDQHVHSANLLSRK
HVRSQICDNCSSEAVSVRCSTDNLVLCQECDWDAHGSCSVTAAHDRTPLE
GFSGCPSALELASLLGLDLQDKNLPARPDPQLQNWDMGLPSVDPSWNGFG
MQDLMVPIQNGVVDLTGDMKRQNSGGISGKQKQGIQKQLLELLKRDLGGG
RGGGGSGSENLVPGTQTRNGWQEENGKGNGDVEGLASIDVRNENGGVGGV
AARAASLETVLQQQTPFSTMLMMPEENRDGDMLWDSNPHGQTQIWDFNLG
RLRDHEESGPLKVTYGSNVSGFMIKDFSELMKESSLTDTKMLRDIYQMNS
PVGHDDIKFNITSNNPEGSLGPATSESNNVPIGQPLSGSVFGDDKGSGAS
NDISFMEQSFLMRGDSISMRTVGTKADMELLAQNRGNAMLRYKEKKKTRR
YDKHIRYESRKARADTRKRVKGRFVKATTESPDG

mRNA from alignment at HM122530:196..1650+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>HM122530.1-COL14.m1 ID=HM122530.1-COL14.m1; Name=COL14; organism=Malus x domestica; type=mRNA; length=1455bp; location=Sequence derived from: HM122530:196..1650+ (Malus x domestica
atggtaagccccaaatctggaggtgtagagggggtgccctgcgatttctg
cagcgaccagccggcggttctctactgccgggcagactccgccaagctct
gcttgttctgcgaccagcacgtgcactccgctaacttgctttcccggaag
cacgtgcgctctcagatctgtgataattgctcttccgaggccgtctccgt
ccgctgctccaccgacaacctcgttctctgccaggagtgcgattgggacg
cccacggcagctgctctgtcactgccgcgcacgatcgcacccctctcgag
gggttctccggctgcccctcggcgctcgagctcgcgtctcttttgggtct
ggatctccaggataagaatctaccggctcgacccgacccgcagctccaga
actgggatatgggtttgccgtccgtggatccgtcttggaatgggtttggg
atgcaggacttgatggtgcccatccagaacggcgtcgttgacctgaccgg
tgatatgaagaggcagaatagtgggggtataagcgggaagcagaagcagg
ggatacagaagcagctgttggagttgcttaagagggacttgggtggtggc
cgcggcggaggtggtagtggcagcgagaatttagtgccagggacgcagac
aaggaatggttggcaggaggagaatgggaagggaaatggggatgtggaag
ggcttgcttcgattgatgtgaggaatgagaatggaggtgttggtggggtt
gcagctcgtgctgcctctttggagacggtgttgcagcaacaaacaccctt
ttcgactatgctcatgatgccagaagagaatcgtgacggtgacatgttgt
gggatagcaacccccatggtcagactcagatatgggattttaatttagga
cggttgagggatcatgaagagtcaggtccattgaaagtcacatatggttc
aaacgtttcaggatttatgattaaagatttcagcgaacttatgaaagaat
catctttgactgatacaaaaatgttaagagatatctaccagatgaactcc
cctgttggacatgatgatataaaattcaatatcacctctaataacccaga
aggcagtctgggtccagcaacatccgaaagcaacaacgtccctatcggac
agccattatcagggtccgtgtttggcgatgacaaaggttctggtgcttct
aatgacatcagttttatggaacaatcttttcttatgaggggtgacagtat
cagtatgagaacggtaggaacaaaagcagacatggagttgcttgcacaaa
atagaggcaacgccatgcttcgttacaaagagaagaagaaaactcgaaga
tatgataagcacataaggtacgagtcaaggaaggcaagagctgatactag
gaagcgagtcaagggtcgatttgtgaaggctactaccgaatctcccgatg
gttag

Coding sequence (CDS) from alignment at HM122530:196..1650+

>HM122530.1-COL14.m1 ID=HM122530.1-COL14.m1; Name=COL14; organism=Malus x domestica; type=CDS; length=1455bp; location=Sequence derived from: HM122530:196..1650+ (Malus x domestica
atggtaagccccaaatctggaggtgtagagggggtgccctgcgatttctg
cagcgaccagccggcggttctctactgccgggcagactccgccaagctct
gcttgttctgcgaccagcacgtgcactccgctaacttgctttcccggaag
cacgtgcgctctcagatctgtgataattgctcttccgaggccgtctccgt
ccgctgctccaccgacaacctcgttctctgccaggagtgcgattgggacg
cccacggcagctgctctgtcactgccgcgcacgatcgcacccctctcgag
gggttctccggctgcccctcggcgctcgagctcgcgtctcttttgggtct
ggatctccaggataagaatctaccggctcgacccgacccgcagctccaga
actgggatatgggtttgccgtccgtggatccgtcttggaatgggtttggg
atgcaggacttgatggtgcccatccagaacggcgtcgttgacctgaccgg
tgatatgaagaggcagaatagtgggggtataagcgggaagcagaagcagg
ggatacagaagcagctgttggagttgcttaagagggacttgggtggtggc
cgcggcggaggtggtagtggcagcgagaatttagtgccagggacgcagac
aaggaatggttggcaggaggagaatgggaagggaaatggggatgtggaag
ggcttgcttcgattgatgtgaggaatgagaatggaggtgttggtggggtt
gcagctcgtgctgcctctttggagacggtgttgcagcaacaaacaccctt
ttcgactatgctcatgatgccagaagagaatcgtgacggtgacatgttgt
gggatagcaacccccatggtcagactcagatatgggattttaatttagga
cggttgagggatcatgaagagtcaggtccattgaaagtcacatatggttc
aaacgtttcaggatttatgattaaagatttcagcgaacttatgaaagaat
catctttgactgatacaaaaatgttaagagatatctaccagatgaactcc
cctgttggacatgatgatataaaattcaatatcacctctaataacccaga
aggcagtctgggtccagcaacatccgaaagcaacaacgtccctatcggac
agccattatcagggtccgtgtttggcgatgacaaaggttctggtgcttct
aatgacatcagttttatggaacaatcttttcttatgaggggtgacagtat
cagtatgagaacggtaggaacaaaagcagacatggagttgcttgcacaaa
atagaggcaacgccatgcttcgttacaaagagaagaagaaaactcgaaga
tatgataagcacataaggtacgagtcaaggaaggcaagagctgatactag
gaagcgagtcaagggtcgatttgtgaaggctactaccgaatctcccgatg
gttag