PGIP1, U77041.1-PGIP1.m1 (mRNA) Malus x domestica

Transcript Overview
NamePGIP1
Unique NameU77041.1-PGIP1.m1
TypemRNA
OrganismMalus x domestica (Apple)
Sourcegenbank
Productpolygalacturonase-inhibiting protein
Genbank Notepg inhibitor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
U77041.1-PGIP1.m1-cds1U77041.1-PGIP1.m1-cds1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
PGIP1U77041.1-PGIP1.p1Malus x domesticapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI1679733
nuccoreU77041.1
Alignments
Feature NameTypeLocationAnalysis
MDU77041 region MDU77041:19..1011+ NCBI Rosaceae gene and mRNA sequences
Chr14 chromosome Chr14:6652029..6653021+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr14 chromosome Chr14:6656830..6657822+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr14 chromosome chr14:7585807..7586799+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr14 chromosome chr14:7590606..7591598+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr14 chromosome chr14:8981995..8982987+ Malus x domestica Whole Genome v1.0p Assembly & Annotation
chr14 chromosome chr14:8986794..8987786+ Malus x domestica Whole Genome v1.0p Assembly & Annotation
Sequences
The following sequences are available for this feature:

mRNA sequence

>U77041.1-PGIP1.m1 ID=U77041.1-PGIP1.m1; Name=PGIP1; organism=Malus x domestica; type=mRNA; length=993bp
atggaactcaagttctccatcttcctctccctaaccctactcttctcctc
cgtcctaaaacccgctctctccgatctctgcaaccccgacgacaaaaaag
tcctcctacaaatcaagaaagccttcggcgacccctacgtcttgacctca
tggaaatcagacactgactgttgtgattggtactgcgtcacctgtgactc
caccacaaaccgcatcaactccctcaccatcttcgccggccaggtatccg
gccaaatcccagccctagtcggagacttgccataccttgaaacccttgaa
ttccacaagcaacctaatctcactggcccaatccaacccgccattgccaa
gctcaaaggactcaagtttctcaggctcagctggaccaacctctcaggct
ctgtccctgacttcctcagccaactcaagaacctcacattcctcgacctc
tccttcaacaacctcaccggcgccatccccagctcgctttctcagctccc
aaacctcaacgctcttcatctagaccgcaataagctcacaggtcatattc
cgaaatcgcttgggcagttcattggcaacgttccagacctgtatctctcc
cacaaccagctctctggcaacattccaacctcattcgctcagatggactt
caccagcatagacttatcacggaacaagctcgaaggtgacgcatccgtga
tatttgggctgaacaagacaacccagattgtggacctgtccaggaacttg
ctggaatttaatctgtcaaaggtggagtttccgacaagcttgacctcgct
ggatatcaaccacaataagatctacgggagtatcccagtggagtttaccc
aactgaatttccagttcctgaacgtgagctacaacaggctgtgtggtcag
attccagtgggtggaaagttgcagagcttcgacgagtattcttatttcca
taaccgatgcttgtgcggtgctccactcccaagctgcaagtaa
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protein sequence of PGIP1

>U77041.1-PGIP1.p1 ID=U77041.1-PGIP1.p1; Name=PGIP1; organism=Malus x domestica; type=polypeptide; length=330bp
MELKFSIFLSLTLLFSSVLKPALSDLCNPDDKKVLLQIKKAFGDPYVLTS
WKSDTDCCDWYCVTCDSTTNRINSLTIFAGQVSGQIPALVGDLPYLETLE
FHKQPNLTGPIQPAIAKLKGLKFLRLSWTNLSGSVPDFLSQLKNLTFLDL
SFNNLTGAIPSSLSQLPNLNALHLDRNKLTGHIPKSLGQFIGNVPDLYLS
HNQLSGNIPTSFAQMDFTSIDLSRNKLEGDASVIFGLNKTTQIVDLSRNL
LEFNLSKVEFPTSLTSLDINHNKIYGSIPVEFTQLNFQFLNVSYNRLCGQ
IPVGGKLQSFDEYSYFHNRCLCGAPLPSCK
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mRNA from alignment at MDU77041:19..1011+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>U77041.1-PGIP1.m1 ID=U77041.1-PGIP1.m1; Name=PGIP1; organism=Malus x domestica; type=mRNA; length=993bp; location=Sequence derived from: MDU77041:19..1011+ (Malus x domestica
atggaactcaagttctccatcttcctctccctaaccctactcttctcctc
cgtcctaaaacccgctctctccgatctctgcaaccccgacgacaaaaaag
tcctcctacaaatcaagaaagccttcggcgacccctacgtcttgacctca
tggaaatcagacactgactgttgtgattggtactgcgtcacctgtgactc
caccacaaaccgcatcaactccctcaccatcttcgccggccaggtatccg
gccaaatcccagccctagtcggagacttgccataccttgaaacccttgaa
ttccacaagcaacctaatctcactggcccaatccaacccgccattgccaa
gctcaaaggactcaagtttctcaggctcagctggaccaacctctcaggct
ctgtccctgacttcctcagccaactcaagaacctcacattcctcgacctc
tccttcaacaacctcaccggcgccatccccagctcgctttctcagctccc
aaacctcaacgctcttcatctagaccgcaataagctcacaggtcatattc
cgaaatcgcttgggcagttcattggcaacgttccagacctgtatctctcc
cacaaccagctctctggcaacattccaacctcattcgctcagatggactt
caccagcatagacttatcacggaacaagctcgaaggtgacgcatccgtga
tatttgggctgaacaagacaacccagattgtggacctgtccaggaacttg
ctggaatttaatctgtcaaaggtggagtttccgacaagcttgacctcgct
ggatatcaaccacaataagatctacgggagtatcccagtggagtttaccc
aactgaatttccagttcctgaacgtgagctacaacaggctgtgtggtcag
attccagtgggtggaaagttgcagagcttcgacgagtattcttatttcca
taaccgatgcttgtgcggtgctccactcccaagctgcaagtaa
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Coding sequence (CDS) from alignment at MDU77041:19..1011+

>U77041.1-PGIP1.m1 ID=U77041.1-PGIP1.m1; Name=PGIP1; organism=Malus x domestica; type=CDS; length=993bp; location=Sequence derived from: MDU77041:19..1011+ (Malus x domestica
atggaactcaagttctccatcttcctctccctaaccctactcttctcctc
cgtcctaaaacccgctctctccgatctctgcaaccccgacgacaaaaaag
tcctcctacaaatcaagaaagccttcggcgacccctacgtcttgacctca
tggaaatcagacactgactgttgtgattggtactgcgtcacctgtgactc
caccacaaaccgcatcaactccctcaccatcttcgccggccaggtatccg
gccaaatcccagccctagtcggagacttgccataccttgaaacccttgaa
ttccacaagcaacctaatctcactggcccaatccaacccgccattgccaa
gctcaaaggactcaagtttctcaggctcagctggaccaacctctcaggct
ctgtccctgacttcctcagccaactcaagaacctcacattcctcgacctc
tccttcaacaacctcaccggcgccatccccagctcgctttctcagctccc
aaacctcaacgctcttcatctagaccgcaataagctcacaggtcatattc
cgaaatcgcttgggcagttcattggcaacgttccagacctgtatctctcc
cacaaccagctctctggcaacattccaacctcattcgctcagatggactt
caccagcatagacttatcacggaacaagctcgaaggtgacgcatccgtga
tatttgggctgaacaagacaacccagattgtggacctgtccaggaacttg
ctggaatttaatctgtcaaaggtggagtttccgacaagcttgacctcgct
ggatatcaaccacaataagatctacgggagtatcccagtggagtttaccc
aactgaatttccagttcctgaacgtgagctacaacaggctgtgtggtcag
attccagtgggtggaaagttgcagagcttcgacgagtattcttatttcca
taaccgatgcttgtgcggtgctccactcccaagctgcaagtaa
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