LHCB, L36064.1-LHCB.m1 (mRNA) Prunus persica

Transcript Overview


Name	LHCB
Unique Name	L36064.1-LHCB.m1
Type	mRNA
Organism	Prunus persica (Peach)
Source	genbank
Product	light-harvesting chlorophyll a/b-binding protein
Genbank Note	precursor\|residues 1 to 34

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
LHCB	L36064.1-LHCB	Prunus persica	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
L36064.1-LHCB.m1-5utr1	L36064.1-LHCB.m1-5utr1	Prunus persica	five_prime_UTR

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
L36064.1-LHCB.m1-3utr1	L36064.1-LHCB.m1-3utr1	Prunus persica	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
L36064.1-LHCB.m1-cds1	L36064.1-LHCB.m1-cds1	Prunus persica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
LHCB	L36064.1-LHCB.p1	Prunus persica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	556367
nuccore	L36064.1

Alignments

Feature Name	Type	Location	Analysis
PRULHP	region	PRULHP:270..1308+	NCBI Rosaceae gene and mRNA sequences
scaffold_3	supercontig	scaffold_3:13835915..13836718-	Prunus persica Whole Genome v1.0 Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at PRULHP:270..1308+
coding sequence from alignment at PRULHP:270..1308+

mRNA sequence

>L36064.1-LHCB.m1 ID=L36064.1-LHCB.m1; Name=LHCB; organism=Prunus persica; type=mRNA; length=804bp
atggcttcttcaacaatggctctctcctccccttctcttgctggccaagc
tgtcaagctcggttcctctgtttctaacattgttggtgagggccgaatta
ccatgcgcaaaaccgcatccaagtccaaaaatgtatcatctggcagcccg
tggtatggcccggaccgtgtcaaatacttgggccccttctctggcgaggc
cccctcttacctcactggagaattccctggtgattacggttgggacactg
ctgggctctcagctgacccagagacctttgccaagaaccgtgagcttgaa
gttatccattcaagatgggccatgcttggtgctctgggctgcgttttccc
tgaactcttgtcccgtaacggggtcaagttcggtgaggctgtatggttca
aggctggcgcccagatattcagtgagggtgggctagactacttgggaaac
ccaagcttagtccatgcccaaagcattttagcaatttgggccacacaagt
tatcttgatgggtgcagtggaaggttacagagttgcaggtgggcctctcg
gagagatcactgacccattatatccaggtgggagctttgacccattaggc
cttgcagaggatccagaggctttcgctgagctgaaggtgaaggagctgaa
gaatggaagactcgccatgttttccatgtttggtttctttgtgcaggcca
ttgttacaggaaaggggccaattgagaacttggctgaccacttagctgat
cctgttaacaacaatgcttggtcatatgccacaaactttgttcctggaaa
gtga

protein sequence of LHCB

>L36064.1-LHCB.p1 ID=L36064.1-LHCB.p1; Name=LHCB; organism=Prunus persica; type=polypeptide; length=290bp
MASSTMALSSPSLAGQAVKLGSSVSNIVGEGRITMRKTASKSKNVSSGSP
WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE
VIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGN
PSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEITDPLYPGGSFDPLG
LAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD
PVNNNAWSYATNFVPGKtransit_peptide336..437

mRNA from alignment at PRULHP:270..1308+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>L36064.1-LHCB.m1 ID=L36064.1-LHCB.m1; Name=LHCB; organism=Prunus persica; type=mRNA; length=1039bp; location=Sequence derived from: PRULHP:270..1308+ (Prunus persica
cggccttcccacattgtctagagagactgaaatactcagtagtcaataca
cttccatttttctcaaatggcttcttcaacaatggctctctcctcccctt
ctcttgctggccaagctgtcaagctcggttcctctgtttctaacattgtt
ggtgagggccgaattaccatgcgcaaaaccgcatccaagtccaaaaatgt
atcatctggcagcccgtggtatggcccggaccgtgtcaaatacttgggcc
ccttctctggcgaggccccctcttacctcactggagaattccctggtgat
tacggttgggacactgctgggctctcagctgacccagagacctttgccaa
gaaccgtgagcttgaagttatccattcaagatgggccatgcttggtgctc
tgggctgcgttttccctgaactcttgtcccgtaacggggtcaagttcggt
gaggctgtatggttcaaggctggcgcccagatattcagtgagggtgggct
agactacttgggaaacccaagcttagtccatgcccaaagcattttagcaa
tttgggccacacaagttatcttgatgggtgcagtggaaggttacagagtt
gcaggtgggcctctcggagagatcactgacccattatatccaggtgggag
ctttgacccattaggccttgcagaggatccagaggctttcgctgagctga
aggtgaaggagctgaagaatggaagactcgccatgttttccatgtttggt
ttctttgtgcaggccattgttacaggaaaggggccaattgagaacttggc
tgaccacttagctgatcctgttaacaacaatgcttggtcatatgccacaa
actttgttcctggaaagtgaggctgagaacttgagagaaagaagcagatt
tgtaacaattgttgtgaaacagaatttctgttaatgtgttatttttatga
aacttacttgggtgtcggcagtgcaaaagaatgcatcaacaatttcttgg
agtaaaatttgcatgtgaatagattcaccttcttataaa

Coding sequence (CDS) from alignment at PRULHP:270..1308+

>L36064.1-LHCB.m1 ID=L36064.1-LHCB.m1; Name=LHCB; organism=Prunus persica; type=CDS; length=804bp; location=Sequence derived from: PRULHP:270..1308+ (Prunus persica
atggcttcttcaacaatggctctctcctccccttctcttgctggccaagc
tgtcaagctcggttcctctgtttctaacattgttggtgagggccgaatta
ccatgcgcaaaaccgcatccaagtccaaaaatgtatcatctggcagcccg
tggtatggcccggaccgtgtcaaatacttgggccccttctctggcgaggc
cccctcttacctcactggagaattccctggtgattacggttgggacactg
ctgggctctcagctgacccagagacctttgccaagaaccgtgagcttgaa
gttatccattcaagatgggccatgcttggtgctctgggctgcgttttccc
tgaactcttgtcccgtaacggggtcaagttcggtgaggctgtatggttca
aggctggcgcccagatattcagtgagggtgggctagactacttgggaaac
ccaagcttagtccatgcccaaagcattttagcaatttgggccacacaagt
tatcttgatgggtgcagtggaaggttacagagttgcaggtgggcctctcg
gagagatcactgacccattatatccaggtgggagctttgacccattaggc
cttgcagaggatccagaggctttcgctgagctgaaggtgaaggagctgaa
gaatggaagactcgccatgttttccatgtttggtttctttgtgcaggcca
ttgttacaggaaaggggccaattgagaacttggctgaccacttagctgat
cctgttaacaacaatgcttggtcatatgccacaaactttgttcctggaaa
gtga