PGIP, AF196909.1-PGIP.m1 (mRNA) Physocarpus capitatus

Transcript Overview


Name	PGIP
Unique Name	AF196909.1-PGIP.m1
Type	mRNA
Organism	Physocarpus capitatus ()
Source	genbank
Product	polygalacturonase inhibitor protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PGIP	AF196909.1-PGIP	Physocarpus capitatus	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
AF196909.1-PGIP.m1-cds1	AF196909.1-PGIP.m1-cds1	Physocarpus capitatus	CDS
AF196909.1-PGIP.m1-cds2	AF196909.1-PGIP.m1-cds2	Physocarpus capitatus	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
PGIP	AF196909.1-PGIP.p1	Physocarpus capitatus	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	13873203
nuccore	AF196909.1

Alignments

Feature Name	Type	Location	Analysis
AF196909	region	AF196909:1..840+	NCBI Rosaceae gene and mRNA sequences

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at AF196909:1..840+
coding sequence from alignment at AF196909:1..840+

mRNA sequence

>AF196909.1-PGIP.m1 ID=AF196909.1-PGIP.m1; Name=PGIP; organism=Physocarpus capitatus; type=mRNA; length=751bp
tcatggaacccagacaacgactgctgtgagtggtactctgtcacctgtga
ttccaccaacaaccgcatcaactccctcaccatcttcgccggagaagtct
ctggccaaatcccgacccaagtcggcgacttaccctatcttgaaaccctt
gaatttcacaagcaacccaatctcactggcccaatccagccctccattgt
caagctcaaaagcctcaagttcctgcgcctcagctggaccaacctctcag
gctctatccctgacttcctcagccaactcaagaaccttaccttccttgat
ctctccttcggcaacttcacaggttccatccccagctcgctttcaaagct
cccgaacctcaacgctcttcatctggaccgtaacaagctcacaggtcata
tcccgaagtcattcggagagttccagggcagcgttccagatctctatctc
tcccacaaccagttctcaggcagcataccaacctcatttgccaaaatgga
tttcagccgcatagacttatcccgtaacaagcttgaaggggatgcatccg
tgatattcgggctgaacaagacaacccagattgtggacctgtcgaggaac
ttgctggagtttaatctgtcaaaggtggtgtttccaaagagcttgacttc
cctggatatcaaccataacaaaatcacagggagtattcctgtggagctga
cccaactcgatttgcagttcctaaacgtgagctacaacaggctgtgtggt
a

protein sequence of PGIP

>AF196909.1-PGIP.p1 ID=AF196909.1-PGIP.p1; Name=PGIP; organism=Physocarpus capitatus; type=polypeptide; length=250bp
SWNPDNDCCEWYSVTCDSTNNRINSLTIFAGEVSGQIPTQVGDLPYLETL
EFHKQPNLTGPIQPSIVKLKSLKFLRLSWTNLSGSIPDFLSQLKNLTFLD
LSFGNFTGSIPSSLSKLPNLNALHLDRNKLTGHIPKSFGEFQGSVPDLYL
SHNQFSGSIPTSFAKMDFSRIDLSRNKLEGDASVIFGLNKTTQIVDLSRN
LLEFNLSKVVFPKSLTSLDINHNKITGSIPVELTQLDLQFLNVSYNRLCG

mRNA from alignment at AF196909:1..840+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>AF196909.1-PGIP.m1 ID=AF196909.1-PGIP.m1; Name=PGIP; organism=Physocarpus capitatus; type=mRNA; length=840bp; location=Sequence derived from: AF196909:1..840+ (Physocarpus capitatus
tcatggaacccagacaacgactgctgtgagtggtactctgtcacctgtga
ttccaccaacaaccgcatcaactccctcaccatcttcgccggagaagtct
ctggccaaatcccgacccaagtcggcgacttaccctatcttgaaaccctt
gaatttcacaagcaacccaatctcactggcccaatccagccctccattgt
caagctcaaaagcctcaagttcctgcgcctcagctggaccaacctctcag
gctctatccctgacttcctcagccaactcaagaaccttaccttccttgat
ctctccttcggcaacttcacaggttccatccccagctcgctttcaaagct
cccgaacctcaacgctcttcatctggaccgtaacaagctcacaggtttga
tattcctttgatatttctgtctggctaacaagtactggcattagatacaa
aatttgcatatgaatttaacacctcgcttgcaggtcatatcccgaagtca
ttcggagagttccagggcagcgttccagatctctatctctcccacaacca
gttctcaggcagcataccaacctcatttgccaaaatggatttcagccgca
tagacttatcccgtaacaagcttgaaggggatgcatccgtgatattcggg
ctgaacaagacaacccagattgtggacctgtcgaggaacttgctggagtt
taatctgtcaaaggtggtgtttccaaagagcttgacttccctggatatca
accataacaaaatcacagggagtattcctgtggagctgacccaactcgat
ttgcagttcctaaacgtgagctacaacaggctgtgtggta

Coding sequence (CDS) from alignment at AF196909:1..840+

>AF196909.1-PGIP.m1 ID=AF196909.1-PGIP.m1; Name=PGIP; organism=Physocarpus capitatus; type=CDS; length=751bp; location=Sequence derived from: AF196909:1..840+ (Physocarpus capitatus
tcatggaacccagacaacgactgctgtgagtggtactctgtcacctgtga
ttccaccaacaaccgcatcaactccctcaccatcttcgccggagaagtct
ctggccaaatcccgacccaagtcggcgacttaccctatcttgaaaccctt
gaatttcacaagcaacccaatctcactggcccaatccagccctccattgt
caagctcaaaagcctcaagttcctgcgcctcagctggaccaacctctcag
gctctatccctgacttcctcagccaactcaagaaccttaccttccttgat
ctctccttcggcaacttcacaggttccatccccagctcgctttcaaagct
cccgaacctcaacgctcttcatctggaccgtaacaagctcacaggtcata
tcccgaagtcattcggagagttccagggcagcgttccagatctctatctc
tcccacaaccagttctcaggcagcataccaacctcatttgccaaaatgga
tttcagccgcatagacttatcccgtaacaagcttgaaggggatgcatccg
tgatattcgggctgaacaagacaacccagattgtggacctgtcgaggaac
ttgctggagtttaatctgtcaaaggtggtgtttccaaagagcttgacttc
cctggatatcaaccataacaaaatcacagggagtattcctgtggagctga
cccaactcgatttgcagttcctaaacgtgagctacaacaggctgtgtggt
a