SDH6, AY244814.1-SDH6.m1 (mRNA) Malus x domestica

Transcript Overview
NameSDH6
Unique NameAY244814.1-SDH6.m1
TypemRNA
OrganismMalus x domestica (Apple)
Sourcegenbank
ProductNAD-dependent sorbitol dehydrogenase 6
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
AY244814.1-SDH6.m1-cds1AY244814.1-SDH6.m1-cds1Malus x domesticaCDS
AY244814.1-SDH6.m1-cds2AY244814.1-SDH6.m1-cds2Malus x domesticaCDS
AY244814.1-SDH6.m1-cds3AY244814.1-SDH6.m1-cds3Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
SDH6AY244814.1-SDH6.p1Malus x domesticapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI37954287
nuccoreAY244814.1
Alignments
Feature NameTypeLocationAnalysis
AY244814 region AY244814:1..1163+ NCBI Rosaceae gene and mRNA sequences
Chr01 chromosome Chr01:29359069..29368801+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr1 chromosome chr1:25181031..25182403+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr1 chromosome chr1:25177388..25178774+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr1 chromosome chr1:25148972..25158683- Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr1 chromosome chr1:31460620..31470331+ Malus x domestica Whole Genome v1.0p Assembly & Annotation
chr1 chromosome chr1:31445028..31480127+ Malus x domestica Whole Genome v1.0p Assembly & Annotation
unanchored chromosome unanchored:21356155..21357380- Malus x domestica Whole Genome v1.0 Assembly & Annotation
Sequences
The following sequences are available for this feature:

mRNA sequence

>AY244814.1-SDH6.m1 ID=AY244814.1-SDH6.m1; Name=SDH6; organism=Malus x domestica; type=mRNA; length=959bp
agatcctacctttcaagctccccgctattggacccaatgatgtccggatt
cggattaaggcggttggtatttgtggaagcgatgttcactacctcaggac
catgaaatgtgcggattttgaggttaaagaaccgatggtgatcggacatg
agtgtgctgggatcgtagacaaagttgggagcgaggtgaagcatctggtg
cctggtgaccgggtggcggttgagcccggtatcagttgctcacggtgtca
gcagtgcaaaggagggcagtacaatctttgccccgacatgaagtttttcg
ccaccccaccggttcatggttccttggcaaatcagattgtgcatcctgcg
gatctatgcttcaagctgccagagaatgtgagcttggaggaaggggcaat
gtgcgagcccttgagtgttggagttcatgcatgtcggcgagccaatgttg
gtcccgaaacaactgttctgatcatcggagcagggcctattggtctggtt
tcagttttggccgctcttgctttcggggcaccaagaattgtcattgtgga
tatggacgacaagcgtttagccatggcaaagtctctcggcgctgatggca
ccgtcaaagtttcaacaaaaatggaggatttggatgacgaagttgccaag
attaaagaagcaatggaatcggaggtggatgtgacctttgattgtgtggg
ttttaataaaaccatgtcgacgggtctcaacgccacacgccccggcggca
aagtctgccttgtcggaatgggacacggcatgatgacagtgcctctcact
ccagctgctgccagggaggttgatgtggttggtgttttccggtgcaagaa
cacatggccactttgcctcgagtttttgagaagtgggaagatcgacgtga
agccgcttattactcaccggtttggatttaccgagaaggaggtggaagaa
gcaagcttg
back to top

protein sequence of SDH6

>AY244814.1-SDH6.p1 ID=AY244814.1-SDH6.p1; Name=SDH6; organism=Malus x domestica; type=polypeptide; length=319bp
ILPFKLPAIGPNDVRIRIKAVGICGSDVHYLRTMKCADFEVKEPMVIGHE
CAGIVDKVGSEVKHLVPGDRVAVEPGISCSRCQQCKGGQYNLCPDMKFFA
TPPVHGSLANQIVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRANVG
PETTVLIIGAGPIGLVSVLAALAFGAPRIVIVDMDDKRLAMAKSLGADGT
VKVSTKMEDLDDEVAKIKEAMESEVDVTFDCVGFNKTMSTGLNATRPGGK
VCLVGMGHGMMTVPLTPAAAREVDVVGVFRCKNTWPLCLEFLRSGKIDVK
PLITHRFGFTEKEVEEASL
back to top

mRNA from alignment at AY244814:1..1163+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>AY244814.1-SDH6.m1 ID=AY244814.1-SDH6.m1; Name=SDH6; organism=Malus x domestica; type=mRNA; length=1163bp; location=Sequence derived from: AY244814:1..1163+ (Malus x domestica
agatcctacctttcaagctccccgctattggtatttacttctctcccttc
ttttaaattcatcgttattttttttccgtttttggttttcaccgttgtag
tgatgctaacatgctgctcccctgttctcttgggatttcttaattttagg
acccaatgatgtccggattcggattaaggcggttggtatttgtggaagcg
atgttcactacctcaggaccatgaaatgtgcggattttgaggttaaagaa
ccgatggtgatcggacatgagtgtgctgggatcgtagacaaagttgggag
cgaggtgaagcatctggtgcctggtgaccgggtggcggttgagcccggta
tcagttgctcacggtgtcagcagtgcaaaggagggcagtacaatctttgc
cccgacatgaagtttttcgccaccccaccggttcatggttccttggcaaa
tcaggtataaatttcgactttcttaacctttgtgacatatgaattctatg
gcatcaggaccgtaaataatgaccatctgtttttaacagattgtgcatcc
tgcggatctatgcttcaagctgccagagaatgtgagcttggaggaagggg
caatgtgcgagcccttgagtgttggagttcatgcatgtcggcgagccaat
gttggtcccgaaacaactgttctgatcatcggagcagggcctattggtct
ggtttcagttttggccgctcttgctttcggggcaccaagaattgtcattg
tggatatggacgacaagcgtttagccatggcaaagtctctcggcgctgat
ggcaccgtcaaagtttcaacaaaaatggaggatttggatgacgaagttgc
caagattaaagaagcaatggaatcggaggtggatgtgacctttgattgtg
tgggttttaataaaaccatgtcgacgggtctcaacgccacacgccccggc
ggcaaagtctgccttgtcggaatgggacacggcatgatgacagtgcctct
cactccagctgctgccagggaggttgatgtggttggtgttttccggtgca
agaacacatggccactttgcctcgagtttttgagaagtgggaagatcgac
gtgaagccgcttattactcaccggtttggatttaccgagaaggaggtgga
agaagcaagcttg
back to top

Coding sequence (CDS) from alignment at AY244814:1..1163+

>AY244814.1-SDH6.m1 ID=AY244814.1-SDH6.m1; Name=SDH6; organism=Malus x domestica; type=CDS; length=959bp; location=Sequence derived from: AY244814:1..1163+ (Malus x domestica
agatcctacctttcaagctccccgctattggacccaatgatgtccggatt
cggattaaggcggttggtatttgtggaagcgatgttcactacctcaggac
catgaaatgtgcggattttgaggttaaagaaccgatggtgatcggacatg
agtgtgctgggatcgtagacaaagttgggagcgaggtgaagcatctggtg
cctggtgaccgggtggcggttgagcccggtatcagttgctcacggtgtca
gcagtgcaaaggagggcagtacaatctttgccccgacatgaagtttttcg
ccaccccaccggttcatggttccttggcaaatcagattgtgcatcctgcg
gatctatgcttcaagctgccagagaatgtgagcttggaggaaggggcaat
gtgcgagcccttgagtgttggagttcatgcatgtcggcgagccaatgttg
gtcccgaaacaactgttctgatcatcggagcagggcctattggtctggtt
tcagttttggccgctcttgctttcggggcaccaagaattgtcattgtgga
tatggacgacaagcgtttagccatggcaaagtctctcggcgctgatggca
ccgtcaaagtttcaacaaaaatggaggatttggatgacgaagttgccaag
attaaagaagcaatggaatcggaggtggatgtgacctttgattgtgtggg
ttttaataaaaccatgtcgacgggtctcaacgccacacgccccggcggca
aagtctgccttgtcggaatgggacacggcatgatgacagtgcctctcact
ccagctgctgccagggaggttgatgtggttggtgttttccggtgcaagaa
cacatggccactttgcctcgagtttttgagaagtgggaagatcgacgtga
agccgcttattactcaccggtttggatttaccgagaaggaggtggaagaa
gcaagcttg
back to top