PGIP, AY333102.1-PGIP.m1 (mRNA) Pyrus pyrifolia

Transcript Overview
NamePGIP
Unique NameAY333102.1-PGIP.m1
TypemRNA
OrganismPyrus pyrifolia ()
Sourcegenbank
Productpolygalacturonase-inhibiting protein
Genbank Noteinhibitor of fungal polygalacturonases
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
AY333102.1-PGIP.m1-cds1AY333102.1-PGIP.m1-cds1Pyrus pyrifoliaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
PGIPAY333102.1-PGIP.p1Pyrus pyrifoliapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI33087506
nuccoreAY333102.1
Alignments
Feature NameTypeLocationAnalysis
AY333102 region AY333102:12..1004+ NCBI Rosaceae gene and mRNA sequences
scaffold00001 supercontig scaffold00001:1263454..1264446+ Pyrus communis Genome v1.0 Draft Assembly & Annotation
Sequences
The following sequences are available for this feature:

mRNA sequence

>AY333102.1-PGIP.m1 ID=AY333102.1-PGIP.m1; Name=PGIP; organism=Pyrus pyrifolia; type=mRNA; length=993bp
atggaactcaagttctccaccttcctctccctaaccctactcttctcctc
cgtcctaaaccccgctctctccgatctctgcaaccccgacgacaaaaaag
tcctcctacaaatcaagaaagccttcggcgacccctacgtcttggcctca
tggaaatcagacactgactgctgcgattggtactgcgtcacctgtgactc
caccacaaaccgcatcaactccctcaccatcttcgccggccaggtatcag
gccaaatccccgccctagtaggagacttgccataccttgaaacccttgaa
ttccacaagcaacccaatctcactggcccaatccaacccgccattgccaa
gctcaaaggactcaagtctctcaggctcagctggaccaacctctcaggct
ctgtccctgacttcctcagccaactcaagaacctcacattcctcgacctc
tccttcaacaacctcaccggtgccatccccagctcgctttctgagctccc
aaacctcggcgctcttcgtctagaccgcaataagctcacaggtcatattc
cgatatcgtttgggcagttcattggcaacgttccagacctgtatctctcc
cacaaccagctttctggtaacattccaacctcattcgctcagatggactt
caccagcatagacttatcacggaacaagctcgaaggtgacgcatccgtga
tatttgggctgaacaagacaacccagattgtggacctgtccaggaacttg
ctggaatttaatctgtcaaaggtggagtttccgacaagcttgacctcgct
ggatatcaaccacaataagatctacgggagtatcccagtggagtttacgc
aactgaatttccagttcctgaacgtgagctacaacaggctgtgtggtcag
attcctgtgggtggaaagttgcagagcttcgacgagtattcttatttcca
taaccgatgcttgtgcggtgctccactcccaagctgcaagtaa
back to top

protein sequence of PGIP

>AY333102.1-PGIP.p1 ID=AY333102.1-PGIP.p1; Name=PGIP; organism=Pyrus pyrifolia; type=polypeptide; length=330bp
MELKFSTFLSLTLLFSSVLNPALSDLCNPDDKKVLLQIKKAFGDPYVLAS
WKSDTDCCDWYCVTCDSTTNRINSLTIFAGQVSGQIPALVGDLPYLETLE
FHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSGSVPDFLSQLKNLTFLDL
SFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPISFGQFIGNVPDLYLS
HNQLSGNIPTSFAQMDFTSIDLSRNKLEGDASVIFGLNKTTQIVDLSRNL
LEFNLSKVEFPTSLTSLDINHNKIYGSIPVEFTQLNFQFLNVSYNRLCGQ
IPVGGKLQSFDEYSYFHNRCLCGAPLPSCK
back to top

mRNA from alignment at AY333102:12..1004+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>AY333102.1-PGIP.m1 ID=AY333102.1-PGIP.m1; Name=PGIP; organism=Pyrus pyrifolia; type=mRNA; length=993bp; location=Sequence derived from: AY333102:12..1004+ (Pyrus pyrifolia
atggaactcaagttctccaccttcctctccctaaccctactcttctcctc
cgtcctaaaccccgctctctccgatctctgcaaccccgacgacaaaaaag
tcctcctacaaatcaagaaagccttcggcgacccctacgtcttggcctca
tggaaatcagacactgactgctgcgattggtactgcgtcacctgtgactc
caccacaaaccgcatcaactccctcaccatcttcgccggccaggtatcag
gccaaatccccgccctagtaggagacttgccataccttgaaacccttgaa
ttccacaagcaacccaatctcactggcccaatccaacccgccattgccaa
gctcaaaggactcaagtctctcaggctcagctggaccaacctctcaggct
ctgtccctgacttcctcagccaactcaagaacctcacattcctcgacctc
tccttcaacaacctcaccggtgccatccccagctcgctttctgagctccc
aaacctcggcgctcttcgtctagaccgcaataagctcacaggtcatattc
cgatatcgtttgggcagttcattggcaacgttccagacctgtatctctcc
cacaaccagctttctggtaacattccaacctcattcgctcagatggactt
caccagcatagacttatcacggaacaagctcgaaggtgacgcatccgtga
tatttgggctgaacaagacaacccagattgtggacctgtccaggaacttg
ctggaatttaatctgtcaaaggtggagtttccgacaagcttgacctcgct
ggatatcaaccacaataagatctacgggagtatcccagtggagtttacgc
aactgaatttccagttcctgaacgtgagctacaacaggctgtgtggtcag
attcctgtgggtggaaagttgcagagcttcgacgagtattcttatttcca
taaccgatgcttgtgcggtgctccactcccaagctgcaagtaa
back to top

Coding sequence (CDS) from alignment at AY333102:12..1004+

>AY333102.1-PGIP.m1 ID=AY333102.1-PGIP.m1; Name=PGIP; organism=Pyrus pyrifolia; type=CDS; length=993bp; location=Sequence derived from: AY333102:12..1004+ (Pyrus pyrifolia
atggaactcaagttctccaccttcctctccctaaccctactcttctcctc
cgtcctaaaccccgctctctccgatctctgcaaccccgacgacaaaaaag
tcctcctacaaatcaagaaagccttcggcgacccctacgtcttggcctca
tggaaatcagacactgactgctgcgattggtactgcgtcacctgtgactc
caccacaaaccgcatcaactccctcaccatcttcgccggccaggtatcag
gccaaatccccgccctagtaggagacttgccataccttgaaacccttgaa
ttccacaagcaacccaatctcactggcccaatccaacccgccattgccaa
gctcaaaggactcaagtctctcaggctcagctggaccaacctctcaggct
ctgtccctgacttcctcagccaactcaagaacctcacattcctcgacctc
tccttcaacaacctcaccggtgccatccccagctcgctttctgagctccc
aaacctcggcgctcttcgtctagaccgcaataagctcacaggtcatattc
cgatatcgtttgggcagttcattggcaacgttccagacctgtatctctcc
cacaaccagctttctggtaacattccaacctcattcgctcagatggactt
caccagcatagacttatcacggaacaagctcgaaggtgacgcatccgtga
tatttgggctgaacaagacaacccagattgtggacctgtccaggaacttg
ctggaatttaatctgtcaaaggtggagtttccgacaagcttgacctcgct
ggatatcaaccacaataagatctacgggagtatcccagtggagtttacgc
aactgaatttccagttcctgaacgtgagctacaacaggctgtgtggtcag
attcctgtgggtggaaagttgcagagcttcgacgagtattcttatttcca
taaccgatgcttgtgcggtgctccactcccaagctgcaagtaa
back to top