EXPA3, AB099926.1-EXPA3.m1 (mRNA) Malus x domestica

Transcript Overview


Name	EXPA3
Unique Name	AB099926.1-EXPA3.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	expansin

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
AB099926.1-EXPA3.m1-cds1	AB099926.1-EXPA3.m1-cds1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
EXPA3	AB099926.1-EXPA3.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	37951209
nuccore	AB099926.1

Alignments

Feature Name	Type	Location	Analysis
AB099926	region	AB099926:1..645+	NCBI Rosaceae gene and mRNA sequences
Chr00	chromosome	Chr00:26717444..26718586-	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr17	chromosome	chr17:3628264..3629406+	Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr17	chromosome	chr17:3645014..3646156-	Malus x domestica Whole Genome v1.0p Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at AB099926:1..645+
coding sequence from alignment at AB099926:1..645+

mRNA sequence

>AB099926.1-EXPA3.m1 ID=AB099926.1-EXPA3.m1; Name=EXPA3; organism=Malus x domestica; type=mRNA; length=645bp
gcacatgctactttctatggtggtggtgatgcttccggcacaatgggtgg
ggcttgtgggtatgggaacctctacagccagggctatgggactaacacag
cagctctaagcactgcattgttcaacaatggcttgacctgtggagcatgc
tatcagatcaggtgtgtgaatgacccacagtggtgcctccctggctccat
catagttactgccacaaacttttgcccaccaggtggctggtgcgaccctc
cccagcaacactttgatctctctcagcctgtcttcctccgcattgcccaa
tacaaagctggggttgtcccagtgtcctacagaagggttagatgcaggag
aagaggaggcataaggttcactgtgaatggacactcttacttcaacttag
tccttgtgacaaacgtcggtggtgctggagatgtgcaatctgtggccatc
aagggctccaggactcggtggcaagcaatgtcaagaaactggggccaaaa
ctggcagagcaattcttacctcaatggacaaagcctctcttttattgtga
ccaccagtgatggccgcagattggtttcttacaatgttgcccctccgaat
tggtcatttggtcagacatacactgggagacagtttctctattag

protein sequence of EXPA3

>AB099926.1-EXPA3.p1 ID=AB099926.1-EXPA3.p1; Name=EXPA3; organism=Malus x domestica; type=polypeptide; length=214bp
AHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGAC
YQIRCVNDPQWCLPGSIIVTATNFCPPGGWCDPPQQHFDLSQPVFLRIAQ
YKAGVVPVSYRRVRCRRRGGIRFTVNGHSYFNLVLVTNVGGAGDVQSVAI
KGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFIVTTSDGRRLVSYNVAPPN
WSFGQTYTGRQFLY

mRNA from alignment at AB099926:1..645+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>AB099926.1-EXPA3.m1 ID=AB099926.1-EXPA3.m1; Name=EXPA3; organism=Malus x domestica; type=mRNA; length=645bp; location=Sequence derived from: AB099926:1..645+ (Malus x domestica
gcacatgctactttctatggtggtggtgatgcttccggcacaatgggtgg
ggcttgtgggtatgggaacctctacagccagggctatgggactaacacag
cagctctaagcactgcattgttcaacaatggcttgacctgtggagcatgc
tatcagatcaggtgtgtgaatgacccacagtggtgcctccctggctccat
catagttactgccacaaacttttgcccaccaggtggctggtgcgaccctc
cccagcaacactttgatctctctcagcctgtcttcctccgcattgcccaa
tacaaagctggggttgtcccagtgtcctacagaagggttagatgcaggag
aagaggaggcataaggttcactgtgaatggacactcttacttcaacttag
tccttgtgacaaacgtcggtggtgctggagatgtgcaatctgtggccatc
aagggctccaggactcggtggcaagcaatgtcaagaaactggggccaaaa
ctggcagagcaattcttacctcaatggacaaagcctctcttttattgtga
ccaccagtgatggccgcagattggtttcttacaatgttgcccctccgaat
tggtcatttggtcagacatacactgggagacagtttctctattag

Coding sequence (CDS) from alignment at AB099926:1..645+

>AB099926.1-EXPA3.m1 ID=AB099926.1-EXPA3.m1; Name=EXPA3; organism=Malus x domestica; type=CDS; length=645bp; location=Sequence derived from: AB099926:1..645+ (Malus x domestica
gcacatgctactttctatggtggtggtgatgcttccggcacaatgggtgg
ggcttgtgggtatgggaacctctacagccagggctatgggactaacacag
cagctctaagcactgcattgttcaacaatggcttgacctgtggagcatgc
tatcagatcaggtgtgtgaatgacccacagtggtgcctccctggctccat
catagttactgccacaaacttttgcccaccaggtggctggtgcgaccctc
cccagcaacactttgatctctctcagcctgtcttcctccgcattgcccaa
tacaaagctggggttgtcccagtgtcctacagaagggttagatgcaggag
aagaggaggcataaggttcactgtgaatggacactcttacttcaacttag
tccttgtgacaaacgtcggtggtgctggagatgtgcaatctgtggccatc
aagggctccaggactcggtggcaagcaatgtcaagaaactggggccaaaa
ctggcagagcaattcttacctcaatggacaaagcctctcttttattgtga
ccaccagtgatggccgcagattggtttcttacaatgttgcccctccgaat
tggtcatttggtcagacatacactgggagacagtttctctattag