CN445290-SSR, CN445290-SSR (genetic_marker) Malus x domestica | GDR

Marker Overview

Marker Overview


Name	CN445290-SSR
Genbank ID	N/A
Type	SSR
Species	Malus x domestica
Repeat Motif	GA
PCR Condition	annealing temp 60 degree
Primer 1	CN445290-SSR.primer 1: TCTCAGTTGCTCTGGCTTTG
Primer 2	CN445290-SSR.primer 2: GTTTGCAATCAATGCCACTCTTC
Product Length	230-242
Polymorphism	P_ CN445290-SSR
Publication	[view all]
Contact	A. Patocchi

Contact

Name

Details

A. Patocchi

First name:	Andrea
Last name:	Patocchi
Institution:	Agroscope Changins-W?denswil Research Station ACW
Address:	Standort W?denswil Schloss Postfach 185 8820 W?denswil
Country:	SWITZERLAND
Email:	andrea.patocchi@acw.admin.ch
Phone:	+41 44 783 6313
Fax:	+41 (0)44 783 63 05

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr06	chromosome	Chr06:32863545..32863780 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	GDR marker alignment to genome using primer sequences
chr6A	chromosome	chr6A:31491214..31491437 .	Malus x domestica ‘Honeycrisp’ Genome v1.1.a1 Assembly & Annotation	GDR marker alignment to genome using primer sequences

Publications


Year	Publication
2006	Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-FD-F1-2006	D6	N/A	66.4	CN445290-SSR	View
2	Apple-RGTxGD-F1-2015	RGT_6	N/A	46.97	CN445290-SSR	View
3	Apple-RGTxGD-F1-2015	GD_6	N/A	62.88	CN445290-SSR	View
4	Apple-RGxPI6-F1	LG6	N/A	60.2	CN445290-SSR	View