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Marker Overview
Name | s3_17988256 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s3_17988256 |
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Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | AGAAAGGTTGGATCAAGATGGTGCCCTTGAGACTCAAAGTCAAAGGTCTTAAACTGGAGG
GGTCACGGGAGACTAATTGTGTGGTGACATTGTAGGCTATGTTAGCCCCTGCACTGTCAC
CAACTATGAACAAGCTTGACAAGCTGCACC |
3' Flanking Sequence | ACTTAACCACCATCTTTGCTCACTAGGCTCACTCATAGCTTGTTGTTTCACCCACATAAG
AGTTTTGAATCCGTCGTCATAAGCAGCAGGGAGACGGTTTTCTGGGGCTAAACGGTAATT
CACAGAGATGATGACACAACTTGCTTTGCA |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
Alignments
The following features are aligned
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_17988256 ID=s3_17988256; Name=s3_17988256; organism=Prunus avium; type=genetic_marker; length=301bp AGAAAGGTTGGATCAAGATGGTGCCCTTGAGACTCAAAGTCAAAGGTCTT AAACTGGAGGGGTCACGGGAGACTAATTGTGTGGTGACATTGTAGGCTAT GTTAGCCCCTGCACTGTCACCAACTATGAACAAGCTTGACAAGCTGCACC YACTTAACCACCATCTTTGCTCACTAGGCTCACTCATAGCTTGTTGTTTC ACCCACATAAGAGTTTTGAATCCGTCGTCATAAGCAGCAGGGAGACGGTT TTCTGGGGCTAAACGGTAATTCACAGAGATGATGACACAACTTGCTTTGC A
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