SNP_FB_0773781, SNP_FB_0773781 (genetic_marker) Malus x domestica

Marker Overview

Name

SNP_FB_0773781

dbSNP ID

SNP Array ID

480K SNP array for apple:	AX-115198638
20K SNP array for apple:	SNP_FB_0773781

Type

SNP

SNP Alleles

A/G

Probe 1

SNP_FB_0773781.probe: TTCTTTGGCATGGAATAAAGAAAGCACAAGAAGACTAGATCCTCTCAAAC

5' Flanking Sequence

TTTAAACAAAAAGTTGCTACAAAAAATAAANATCACATTATGCAACAATAACTTAAAGGT

3' Flanking Sequence

GTTTGAGAGGATCTAGTCTTCTTGTGCTTTCTTTATTCCATGCCAAAGAATAGGATAATT

Species

Publication

Contact

Associated With

Contact

Name

Details

Michela Troggio

First name:	Michela
Last name:	Troggio
Title:	Researcher
Institution:	Research and Innovation Centre, Fondazione Edmund Mach
Address:	Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:	Italy
Email:	ti.hcamf@oiggort.alehcim
Phone:	+39 0461 615111
Fax:	+39 0461 650218

Libraries


Library Name	Type
20K SNP array for apple	SNP_chip
480K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr13	chromosome	Chr13:954935..954935 +	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr09	chromosome	Chr09:2151903..2151903 -	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Publications


Year	Publication
2014	Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2016	Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-consensus-Allard-2016	LG9	N/A	8.06	SNP_FB_0773781	View

Sequence

>SNP_FB_0773781 ID=SNP_FB_0773781; Name=SNP_FB_0773781; organism=Malus x domestica; type=genetic_marker; length=69bp
ATCACATTATGCAACAATAACTTAAAGGT[C/T]GTTTGAGAGGATCTAG
TCTTCTTGTGCTTTCTTTA

Annotated Terms

The following terms have been associated with this genetic_marker:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000201215	epicatechin content
28:procyanidin B1 content	procyanidin B1 content
MAIN:000201221	procyanidin B2 content
28:procyanidin B5 content	procyanidin B5 content
28:procyanidin B7 content	procyanidin B7 content
MAIN:000201216	unknown procyanidin oligomer 1 content