AX-89869636, AX-89869636 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89869636
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88826180
TypeSNP
SNP AllelesA/G
Probe 1AX-89869636.AX-89869636: GAAGAAAAGATTATCCGTTTTACAGTGTTT
5' Flanking SequenceGCATAAAGTGATTAATGGGTCAAAAGTCAGTGACC
3' Flanking SequenceTTTGTGACATTTTGCCTATTAGAAAAGAAGGAGGG
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentCodon-based SNP
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Fvb2chromosomeFvb2:20175623..20175693 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb2chromosomeFvb2:20180318..20180388 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb1chromosomeFvb1:13845134..13845183 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb1chromosomeFvb1:11766750..11766789 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
FvbUnchromosomeFvbUn:1123153..1123188 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb6chromosomeFvb6:6939935..6939983 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb6chromosomeFvb6:20069000..20069039 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb6chromosomeFvb6:15700525..15700560 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb1chromosomeFvb1:13844446..13844494 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb1chromosomeFvb1:21516494..21516542 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb1chromosomeFvb1:11766128..11766161 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb6-4chromosomeFvb6-4:20154080..20154128 +Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb6-2chromosomeFvb6-2:1250030..1250081 +Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb3-4chromosomeFvb3-4:12676921..12676956 +Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb1-3chromosomeFvb1-3:27407633..27407682 +Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb1-1chromosomeFvb1-1:8240757..8240805 +Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb7-3chromosomeFvb7-3:23924213..23924256 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb7-1chromosomeFvb7-1:704302..704355 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb6-2chromosomeFvb6-2:1249380..1249430 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb6-2chromosomeFvb6-2:34770128..34770178 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb5-3chromosomeFvb5-3:7217068..7217098 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb5-2chromosomeFvb5-2:10623678..10623726 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb5-1chromosomeFvb5-1:25867302..25867350 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb4-4chromosomeFvb4-4:22512054..22512102 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb4-4chromosomeFvb4-4:25878678..25878729 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb4-4chromosomeFvb4-4:8670076..8670131 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb4-1chromosomeFvb4-1:8090289..8090335 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb2-3chromosomeFvb2-3:6986204..6986250 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb1-4chromosomeFvb1-4:8206696..8206745 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb1-3chromosomeFvb1-3:20046967..20047016 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb1-3chromosomeFvb1-3:27311104..27311153 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
LG2chromosomeLG2:15742989..15742989 .Fragaria vesca Whole Genome v1.1 Assembly & Annotationn/a
Sequence
>AX-89869636 ID=AX-89869636; Name=AX-89869636; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
GCATAAAGTGATTAATGGGTCAAAAGTCAGTGACCRTTTGTGACATTTTG
CCTATTAGAAAAGAAGGAGGG