AX-123364748

Marker Overview

Name

AX-123364748

dbSNP ID

N/A

SNP Array ID

50K SNP array for cultivated strawberry:	Affx-88822321
850K SNP array for cultivated strawberry:	Affx-88822321
35K SNP array for cultivated strawberry:	Affx-88822321

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

TCTCCAAGTTTCAAGCCATAACAGCAAAAGAACTT

3' Flanking Sequence

TGATGACTTCTGTGCCTCAAAACTCACAGAGACTC

Species

Fragaria x ananassa

Publication

[view all]

Contact

S Verma

Contact

Name

Details

S Verma

First name:	S
Last name:	Verma
Institution:	University of Florida
Country:	United States
Last update:	2017

Libraries


Library Name	Type
35K SNP array for cultivated strawberry	SNP_chip
50K SNP array for cultivated strawberry	SNP_chip
850K SNP array for cultivated strawberry	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Fvb2-1	chromosome	Fvb2-1:5893922..5893922 .	Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
Alignment of Fragaria x ananassa 50K Array SNPs to Fragaria x ananassa Camarosa Genome Assembly v1.0	2020-02-20
Alignment of Fragaria x ananassa 850K Array SNPs to Fragaria x ananassa Camarosa Genome Assembly v1.0	2020-02-20

Publications


Year	Publication
2020	Hardigan Michael A., Feldmann Mitchell J., Lorant Anne, Bird Kevin A., Famula Randi, Acharya Charlotte, Cole Glenn, Edger Patrick P., Knapp Steven J. Genome Synteny Has Been Conserved Among the Octoploid Progenitors of Cultivated Strawberry Over Millions of Years of Evolution. Front. Plant Sci., 2020 February 7; 10:1789 \| https://doi.org/10.3389/fpls.2019.01789
2018	Pincot DDA, Poorten TJ, Hardigan MA, Harshman JM, Acharya CB, Cole GS, Gordon TR, Stueven M, Edger PP, Knapp SJ. Genome-Wide Association Mapping Uncovers Fw1, a Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry. G3 (Bethesda). 2018 Mar 30; 8(5):1817-1828.
2017	Verma S, Bassil NV, van de Weg E, Harrison RJ, Monfort A, Hidalgo JM, Amaya I, Denoyes B, Mahoney L, Davis TM, Fan Z, Knapp S, Whitaker VM. Development and evaluation of the Axiom IStraw35 384HT array for the allo-octoploid cultivated strawberry Fragaria x ananassa. Acta Hortic. (1156): 75–82. 10.17660/ActaHortic.2017.1156.10.

Sequence

>AX-123364748 ID=AX-123364748; Name=AX-123364748; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
TCTCCAAGTTTCAAGCCATAACAGCAAAAGAACTTRTGATGACTTCTGTG
CCTCAAAACTCACAGAGACTC