Pav-HB-04-1

Haplotype Block Overview
Name Pav-HB-04-1
Species Prunus avium
Stock Haplotype [view all 516]
Haplotype [view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Pp04chromosomePp04:234976..2841196 .Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)n/a
Stock Haplotype
NameHaplotype
Summit 4 5
Lambert 5 6
Regina 16 21
Ambrunes 10 9
Lapins 13 6
Stella 3 6
Sweetheart 13 6
Van 13 4
Schneiders 15 16
Bing 4 5
Rainier 4
5.18.25-001 13 9
5.3.1-001 16 4
5.3.1-002 13 16
Benton 6 8
Brooks 4 8
Cashmere 3 9
Chelan 3 7
Chinook 4 6
Cowiche 6 7
Gil Peck 4 6
Glacier 3 9
Kiona 9
Mildew Immune Mazzard #17 17 18
Mildew Immune Mazzard #23 18 19
Newstar 3 4
NY 54 2 20
PMR-1 12 8
Sato Nashiki 22 5
Schmidt 12 3
Selah 4 6
Tieton 6 8
Ulster 4 6
Vic 3 5
Windsor 23 6
23_1_47 2 3
23_2_46 20 3
23_3_24 20 3
23_3_28 2
23_3_40 20 3
23_5_17 2 3
23_8_24 2 3
23_8_45 2 20
4.10.19-001 6
4.10.19-002 6 8
4.10.19-003 6
4.10.19-004 13 8
4.10.19-005 13 16
4.10.19-006 13 8
4.10.19-008 13 6
4.10.19-009 13 6
4.10.19-010 13 6
4.10.19-011 13 6
4.10.2-001 10 13
4.10.2-002 10 13
4.10.2-004 6 9
4.10.2-005 13 9
4.10.2-006 10 6
4.10.2-008 6
4.10.2-009 13 9
4.10.2-010 10 6
4.10.5-001 3 6
4.10.5-002 13 3
4.10.5-003 3 6
4.10.5-004 6 7
4.10.5-005 13 3
4.10.5-006 3 6
4.10.5-015 6
4.10.5-016 13 3
4.10.5-018 6 7
4.10.5-019 6 7
4.10.5-020 3 6
4.10.5-028 6 7
4.10.5-029 13 3
4.10.5-030 13 4
4.16.2-001 10 4
4.18.15-001 13 16
4.18.15-002 13 21
4.18.15-003 13 16
4.18.15-004 13 21
4.18.15-005 13 16
4.18.15-006 13 21
4.18.15-007 4 6
4.18.15-009 13 21
4.18.15-011 21 6
4.18.15-012 16 6
4.18.15-013 21 6
4.18.15-014 16
4.18.15-015 21 6
4.18.15-016 6
4.18.15-028 16 6
4.18.15-030 16 6
4.18.15-039 16 6
4.18.15-040 13 16
4.18.15-043 13
4.18.2-005 10 13
4.18.2-007 6 9
4.18.2-008 13 9
4.18.2-010 10 13
4.18.2-015 10 13
4.18.2-016 6 9
4.18.2-018 10 13
4.18.2-019 13 9
4.18.2-020 6 9
4.18.2-024 10 6
4.18.2-027 10 6
4.18.2-028 6 9
5.12.5-005 9
5.12.5-007 3 9
5.12.5-008 3 9
5.12.5-009 9
5.12.5-010 7 9
5.12.5-011 3 9
5.12.5-019 5 9
5.12.5-020 7 9
5.12.5-021 7 9
5.12.5-022 7 9
5.14.15-003 16 4
5.14.15-004 21 4
5.14.15-005 21 4
5.14.15-006 16 4
5.14.15-007 16 4
5.14.15-013 16 4
5.14.15-014 21 4
5.14.15-015 16 4
5.14.15-016 16 4
5.14.15-017 16 4
5.14.15-018 21 4
5.14.15-019 16 4
5.14.15-020 21 4
5.14.23-003 4 6
5.14.23-004 4 6
5.14.23-006 4 8
5.23.15-001 6 8
5.23.15-002 21 8
5.23.2-001 8 9
5.23.2-002 9
5.23.2-003 10 8
5.28.15-001 21 7
5.28.15-002 16 6
5.28.15-003 16 7
5.28.15-004 21 6
5.28.15-005 16 6
5.28.15-006 16
5.28.15-007 21 6
5.28.15-008 21 6
5.28.15-009 16 6
5.28.15-010 16
5.28.15-011 21 6
5.28.15-012 21 6
5.28.15-013 16
5.28.37-001 4 6
5.28.37-002 6
5.28.37-003 4 6
5.28.37-004 4 7
5.28.37-005 5 7
5.28.37-008 4 6
5.28.37-009 4
5.28.37-010 4 7
5.28.37-012 15 6
5.4.15-004 21 5
5.4.15-005 16 5
6.14.2-006 4 9
6.14.2-007 10 4
6.14.2-008 10 4
6.14.2-009 14 4
6.14.2-010 10 4
6.14.2-011 4 9
6.14.2-012 10 4
6.14.2-013 4
6.14.2-015 4 9
6.29.49-001 18 8
6.29.49-002 18 8
6.29.49-003 8
6.29.49-005 18 8
6.29.49-007 18 4
6.29.49-008 17 4
6.30.49-009 17 4
6.30.49-011 18 8
6.30.49-012 18 8
6.30.49-013 18 4
6.30.49-014 18 4
6.30.49-015 17 4
6.30.49-016 17 4
6.30.49-017 17 4
6.31.49-003 12
6.31.49-004 12 18
6.31.49-005 17 4
6.31.49-006 4
6.31.49-007 4
6.31.49-009 18 4
6.31.49-010 17 4
6.31.49-011 12 17
6.31.49-012 12 17
6.31.49-013 17 4
6.31.49-014 18 4
6.31.49-015 17 4
6.32.49-032 17 4
6.32.49-033 18 8
6.32.49-034 17 8
6.32.49-035 17 4
6.32.49-038 17 8
6.32.49-039 17 4
6.32.49-040 18 4
6.32.49-041 17 8
6.33.49-001 17 4
6.33.49-002 17 8
6.33.49-003 18 4
6.33.49-004 18
23-01-11 2 3
23-02-34 2
23-03-13 2 3
23-03-23 2 20
23-03-48 2 20
23-03-56 2 3
23-06-04 2
23-06-23 2 20
23-07-26 2 3
23-08-55 2 3
Dzherlo 14 4
Olympus 4 6
PC 7146-16 3 8
Kordia 16 5
Cristobalina 10 7
Vittoria 26 27
FR20T047 7
FR13T004 4 6
FR13T071 4
FR31T121 27 6
FR32T087 11 4
FR32T088 11 4
FR32T093 11 4
FR20T045 16 7
FR26T117 13 4
FR29T115 18 8
PC 9816-005 12 4
PC 9816-023 4
PC 9816-041 4 8
PC 9816-059 4 8
PC 9816-083 4 8
PC 9816-103 4 8
PC 9816-105 4 8
PC 9816-106 12 4
PC 9816-112 4 8
PC 9816-078 13 8
PC 9819-005 12 13
PC 9819-031 4 8
PC 9819-038 12
PC 9814-025 12 4
PC 9814-078 5 8
PC 9814-103 5 8
PC 9814-105 12 4
PC 9814-026 12 4
PC 9814-028 8
PC 9814-055 5 8
PC 9814-062 5 8
PC 9814-063 5 8
PC 9814-068 5 8
PC 9814-071 4 8
PC 9814-076 12 4
PC 9819-034 12 5
PC 9816-042 29 4
Emperor Francis 2 3
Black Republican 12 4
Krupnoplodnaya 16 9
Early Burlat 8 9
Venus 23 6
Moreau 7 8
Index 3 4
Sunburst 3 5
6.14.6-008 10 4
FR02T062 10 13
FR02T063 10 13
5.14.23.001 4 8
6.16.44-005 6 8
6.23.44-001 6 8
6.23.44-002 6 8
6.23.55-006 6
6.23.55-010 8
6.23.6-002 6 8
6.23.6-003 8
6.16.44-001 11 4
6.16.44-002 11 4
6.16.44-003 11 4
6.28.44-001 11 7
6.28.44-002 11 7
6.4.44-003 11 5
6.4.44-004 11 5
6.4.44-006 11 4
6.4.44-007 11 4
6.4.44-009 11 5
6.4.44-010 11 5
6.4.45-001 11 4
4.3.1-004 5
4.3.1-009 5
5.3.1-008 5
5.3.1-010 16 4
5.3.1-015 5
5.3.1-016 16 4
5.3.1-017 4 5
6.30.50-002 4
6.14.6-003 4
6.28.45-001 6 7
FR09T089 3 9
6.12.45-001 10 9
6.12.45-002 7 9
6.12.45-003 10 9
6.12.45-004 7 9
6.12.45-005 10 9
6.12.45-007 7 9
6.12.45-008 9
6.12.45-009 7 9
6.12.45-010 10 9
6.14.45-001 4 7
6.14.45-003 10 4
6.14.45-004 10 4
6.14.45-005 10 4
6.14.45-006 4 7
6.14.45-007 4 7
6.14.45-008 4 7
6.14.45-009 4 7
6.28.45-002 10
6.14.6-001 14 4
6.14.6-002 14 4
6.14.6-004 14 4
6.14.6-005 14 4
6.14.6-006 14 4
6.14.6-007 14 4
6.14.6-010 4
6.23.6-004 4 8
6.23.6-005 8
6.23.6-007 4 6
6.23.6-008 14 6
6.23.6-012 4 6
6.28.44-005 4 7
6.28.55-006 4 6
6.28.55-007 6 8
6.23.6-001 13 6
6.23.6-006 54 6
6.23.6-009 6 8
6.4.44-001 5 56
6.4.6-001 6 8
FR04T029 6 8
FR08T074 8
6.28.55-002 4 7
FR01T050 5 6
5.10.25-001 13 9
5.10.25-002 16
5.16.25-002 9
5.16.25-003 6 9
5.16.25-004 6 9
5.16.25-005 4 9
5.16.25-009 6 9
5.16.25-010 4 9
5.16.25-013 4 9
5.18.25-005 6 9
4.3.1-008 13 5
5.3.1-005 13 16
FR09T037 12 13
6.29.50-001 19 4
6.29.50-002 18 4
6.29.50-003 19 4
6.29.50-004 19 4
6.29.50-005 18 8
6.29.50-007 18 4
6.29.50-008 19 4
6.30.50-004 18 4
6.30.50-005 18 4
6.31.50-001 19 4
6.31.50-002 12 19
6.31.50-003 12 19
6.31.50-004 19 4
6.31.50-005 19 4
6.32.50-001 19 8
6.32.50-002 18 4
6.32.50-003 4
6.32.50-004 18 8
6.32.50-005 19 8
6.32.50-006 19 8
6.32.50-007 18 8
6.32.50-008 19 8
6.33.50-001 19 4
5.10.26-001 13 7
5.10.26-002 6 7
5.10.26-003 13 7
5.10.26-004 6 7
5.10.26-005 6 8
5.10.26-007 6 8
5.10.26-008 6 8
5.13.26-001 7 8
5.13.26-002 12 8
5.13.26-003 12 7
5.13.26-004 7 8
5.13.26-005 8
5.13.26-006 12 7
5.13.26-007 8
5.13.26-009 8
5.14.26-001 4 7
5.14.26-002 4 7
5.14.26-003 4 8
5.16.26-001 6 7
5.16.26-002 4 8
5.16.26-003 4 7
5.16.40-001 4 8
5.18.26-001 6 7
5.18.26-002 13 8
FR06T097 13 8
FR07T026 13 4
6.28.44-003 4 7
AA 12 4
PC 9816-069 4 8
PC 9816-079 4 8
PC 9816-096 4 8
PC 9816-104 12 4
PC 9816-114 4 8
PC 9817-097 4 8
4.18.15-010 21 6
4.18.15-042 13 16
4.18.15-047 13 21
4.18.15-048 13 16
4.3.1-003 16 5
4.3.1-005 16
4.3.1-006 16
4.3.1-007 21 5
5.3.1-009 16
5.3.1-011 21 5
5.3.1-012 16 5
5.3.1-013 16 5
5.3.1-014 16
5.4.15-001 16
5.4.15-002 16 5
5.4.15-003 21 5
FR01T070 13 21
FR49T083 16 6
5.16.17-003 6
5.16.25-006 6
5.16.25-008 6
5.16.25-012 6
5.20.6-001 6
6.16.44-008 4
6.4.45-003 4
6.4.6-004 4 6
6.4.6-006 4 6
6.4.6-007 6
6.4.6-008 4 6
6.4.6-009 6 8
5.16.17-001 3 6
5.16.17-004 3 4
6.14.17-001 3 4
6.14.17-002 4 5
6.14.17-003 4 5
6.14.17-004 3 4
6.14.17-005 3 4
FR02T024 5 6
4.14.17-001 4 6
5.13.26-008 8
6.28.44-004 6 7
4.3.1-001 13 5
5.3.1-007 4 5
5.3.1-018 16 4
5.10.40-001 13 6
5.10.40-002 13
5.10.40-003 23 6
5.10.40-004 6
5.10.40-005 23 6
5.10.40-007 6
5.10.40-008 13 6
5.10.40-009 13
5.10.40-010 23 6
5.10.40-011 23 6
5.10.40-012 23 6
5.10.40-013 6
5.10.40-014 13 23
5.10.40-015 13 23
5.10.40-016 13 23
5.10.40-017 13 23
5.13.40-002 12 6
5.13.40-003 12 6
5.13.40-004 23 8
5.16.40-003 6
5.16.40-004 23 6
6.30.50-001 23 8
6.30.50-003 23 4
6.10.55-001 27 6
6.10.55-002 26 6
6.10.55-003 13 26
6.10.55-004 26 6
6.10.55-005 13 26
6.10.55-006 27 6
6.10.55-007 13 27
6.10.55-008 13 27
6.10.55-009 27 6
6.10.55-010 27 6
6.16.55-001 26 4
6.16.55-002 27 4
6.23.17-001 27 6
6.23.55-002 8
6.23.55-005 27 8
6.23.55-007 27 8
6.23.55-008 27 6
6.28.55-001 26 7
6.28.55-003 27 6
6.28.55-004 26 6
6.28.55-005 27 6
5.13.40-001 3 7
5.16.25-001 12 4
5.18.25-004 4 6
5.3.1-006 4 9
6.16.44-004 4
6.16.44-006 11 4
6.16.44-007 4 6
6.16.44-009 67
6.23.17-003 4 6
6.23.17-004 6 8
Bertiolle 11
Napoleon 4 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Pav-HB-04-1Sweet Cherry-RosBREED-1.6K-2019407.35
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970
RosBREED_snp_sweet_cherry_Pp4_00234975BBABBAAABBABAAAABAAAAABBABBBBAABABBBABABAAABABABBBAABAABAAAABABBAAABA
RosBREED_snp_sweet_cherry_Pp4_00275572ABAABAAABBABAAAAAAAABAABAAAAAAABABBBABABAAAAABABABAABAAAAAAAAAABAAABA
RosBREED_snp_sweet_cherry_Pp4_00633664BBABABBBBBBABBBBBBBBABBBBBBBBBAABBAABABAAABBAABABB--ABBBBBAABABBAAAAB
RosBREED_snp_sweet_cherry_Pp4_00832250AAAABAAAAAABAAAAAAAAAAAAAAAAAAABAABBABABAAAAABABAAAABAAAAAAAAAAAAAABA
RosBREED_snp_sweet_cherry_Pp4_00919839BBBBBAABBAABABBBABBBBABBABBBBABBAABBABBBBBABBBBAAB--BABAAABAABBBBBBBA
RosBREED_snp_sweet_cherry_Pp4_01117948ABAABAAAAAABAAABABAAAAABABAAAAABAABBABABAAAAABAAAAAABAAAAAAABABBAAABA
RosBREED_snp_sweet_cherry_Pp4_01159642AAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-BABABAAAAAAAAAAAABAAAAAAAAAAAAAAAA
RosBREED_snp_sweet_cherry_Pp4_01193477BBBBABBBBBBBBBBBBBBBBBBBBBBBBBBBBB-ABABABBBBBBBBBBBBABBBBBBBBBBBBBBBB
RosBREED_snp_sweet_cherry_Pp4_01983101AABABABBBABABAABBBAABAAAAAAABBBBBA-BABABBABABAAABABBBBABBABBBBBABBBBA
RosBREED_snp_sweet_cherry_Pp4_02151854BBBABABBBABBBBBBBBBBBBABABBBBBBBBBBBABBBBABABBBABABBBBBBBBBBBBBBBBBBA
RosBREED_snp_sweet_cherry_Pp4_02559655ABBBAAABBABBBBAABBBABBBBBBBBBABBAB-BAAAABBA--AAAAAABAAABABBAAABAAABAA
RosBREED_snp_sweet_cherry_Pp4_02682092AAABBBAAABAAABAAAAABAABABAAAAAAAAA-AB--BABABABABABAAABAA--AAAAABBABBA
RosBREED_snp_sweet_cherry_Pp4_02712550AAABBBAAABAAABAAAAABAABABAAAAAAAAA-ABBBBABBBABABABAAABAA--AAAAABBABBA
RosBREED_snp_tart_cherry_a_Pp4_00725298AAAABAAAAAABAAAAAAAAAAAAAAAAAAABAABBABABAAAAABABAAAABAAAAAAAAAAAAAABA
RosBREED_snp_tart_cherry_a_Pp4_02170096BAAABAAAAAAAAABAAAAAAAAAAABAAAAAAA-AABABAAA--ABAAAAABBAAAAAAAAAAABABA
RosBREED_snp_tart_cherry_a_Pp4_02689311BBBABABBBABBBABBBBBABBABABBBBBBBBBBBBBAABABABBBABABBBBBBBBBBBBBABBBBB
RosBREED_snp_tart_cherry_a_Pp4_02821452AAAAAAAAAAAAAAABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABAAAAAABAAAABAAAAAAAA
RosCOS1422-162_snp_sweet_cherry_Pp4_02841085AAABABAAABBAABAAAAABAA--BAAAA--ABAAAAABBBBABAAABABAAAAAAAAAAAAABAAAAA
RosCOS1689-287_snp_sweet_cherry_Pp4_00569769ABAAABBABBBABAAABAABABABBAAAABAABBAABABAAABAAABABB--ABABBBBABABBAAAAB