Pav-HB-07-1

Haplotype Block Overview

Name	Pav-HB-07-1
Species	Prunus avium
Stock Haplotype	[view all 518]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Summit	2 3
Lambert	3
Regina	2 4
Ambrunes	3 4
Lapins	2 6
Stella	2 3
Sweetheart	2 6
Van	3 6
Schneiders	2 4
Bing	3 6
Rainier	3 6
5.18.25-001	2 6
5.3.1-001	2 3
5.3.1-002	2 3
Benton	2
Brooks	3 6
Cashmere	3
Chelan	2 3
Chinook	3 6
Cowiche	2 6
Gil Peck	3
Glacier	2 3
Kiona	3
Mildew Immune Mazzard #17	4 5
Mildew Immune Mazzard #23	2 4
Newstar	2 3
NY 54	2 7
PMR-1	3
Sato Nashiki	3 6
Schmidt	8 9
Selah	2 3
Tieton	2
Ulster	3
Vic	6 9
Windsor	5 6
23_1_47	2
23_2_46	3 7
23_3_24	2
23_3_28	2 3
23_3_40	2 7
23_5_17	2
23_8_24	2 7
23_8_45	2 3
4.10.19-001	2 6
4.10.19-002	2
4.10.19-003	2 6
4.10.19-004	2
4.10.19-005	2 6
4.10.19-006	2
4.10.19-008	2
4.10.19-009	2 6
4.10.19-010	2
4.10.19-011	2
4.10.2-001	4 6
4.10.2-002	4 6
4.10.2-004	4 6
4.10.2-005	2 3
4.10.2-006	2 3
4.10.2-008	2 6
4.10.2-009	3 6
4.10.2-010	2 4
4.10.5-001	3 6
4.10.5-002	2 3
4.10.5-003	3 6
4.10.5-004	2 6
4.10.5-005	2
4.10.5-006	2
4.10.5-015	2 6
4.10.5-016	2 3
4.10.5-018	3 6
4.10.5-019	3 6
4.10.5-020	2
4.10.5-028	2 3
4.10.5-029	2
4.10.5-030	2 6
4.16.2-001	3 4
4.18.15-001	2 4
4.18.15-002	2 4
4.18.15-003	2 4
4.18.15-004	2 6
4.18.15-005	2 6
4.18.15-006	2 4
4.18.15-007	2 6
4.18.15-009	2 4
4.18.15-011	4 6
4.18.15-012	2 6
4.18.15-013	2 4
4.18.15-014	4 6
4.18.15-015	2 6
4.18.15-016	4 6
4.18.15-028	2 6
4.18.15-030	2
4.18.15-039	4 6
4.18.15-040	2
4.18.15-043	4 6
4.18.2-005	2 4
4.18.2-007	4 6
4.18.2-008	4 6
4.18.2-010	2 3
4.18.2-015	3 6
4.18.2-016	2 4
4.18.2-018	2 3
4.18.2-019	3 6
4.18.2-020	4 6
4.18.2-024	3 6
4.18.2-027	3 6
4.18.2-028	3 6
5.12.5-005	3
5.12.5-007	3
5.12.5-008	2 3
5.12.5-009	2 3
5.12.5-010	2 3
5.12.5-011	2 3
5.12.5-019	2 3
5.12.5-020	2 3
5.12.5-021	3
5.12.5-022	2 3
5.14.15-003	3 4
5.14.15-004	3 4
5.14.15-005	4 6
5.14.15-006	3 4
5.14.15-007	3 4
5.14.15-013	4 6
5.14.15-014	4 6
5.14.15-015	2 6
5.14.15-016	2 3
5.14.15-017	3 4
5.14.15-018	2 3
5.14.15-019	3 4
5.14.15-020	2 3
5.14.23-003	2 6
5.14.23-004	2 3
5.14.23-006	2 3
5.23.15-001	2
5.23.15-002	2 4
5.23.2-001	2 3
5.23.2-002	2 3
5.23.2-003	2 3
5.28.15-001	4 6
5.28.15-002	4 6
5.28.15-003	4 6
5.28.15-004	2 6
5.28.15-005	2 6
5.28.15-006	2 4
5.28.15-007	4 6
5.28.15-008	2 4
5.28.15-009	2 6
5.28.15-010	2 6
5.28.15-011	2 6
5.28.15-012	2 6
5.28.15-013	2
5.28.37-001	3 6
5.28.37-002	2 3
5.28.37-003	2 6
5.28.37-004	2 3
5.28.37-005	2 3
5.28.37-008	2 6
5.28.37-009	2 3
5.28.37-010	2 3
5.28.37-011	2 6
5.28.37-012	2 6
5.4.15-004	2 6
5.4.15-005	3 4
6.14.2-006	4 6
6.14.2-007	3 6
6.14.2-008	3 6
6.14.2-009	3
6.14.2-010	3 4
6.14.2-011	3 6
6.14.2-012	4 6
6.14.2-013	3 6
6.14.2-015	3 6
6.29.49-001	3 5
6.29.49-002	4 6
6.29.49-003	4 6
6.29.49-005	4 6
6.29.49-007	3 5
6.29.49-008	3 5
6.30.49-009	4 6
6.30.49-011	3 4
6.30.49-012	4 6
6.30.49-013	4 6
6.30.49-014	3 4
6.30.49-015	3 5
6.30.49-016	4 6
6.30.49-017	4 6
6.31.49-003	3 5
6.31.49-004	5 6
6.31.49-005	3 4
6.31.49-006	3 5
6.31.49-007	3 4
6.31.49-009	5 6
6.31.49-010	4 6
6.31.49-011	4 6
6.31.49-012	5 6
6.31.49-013	3 5
6.31.49-014	4 6
6.31.49-015	5 6
6.32.49-032	4 6
6.32.49-033	3 5
6.32.49-034	3 4
6.32.49-035	3 4
6.32.49-037	3 4
6.32.49-038	5 6
6.32.49-039	4 6
6.32.49-040	5 6
6.32.49-041	4 6
6.33.49-001	5 6
6.33.49-002	3 4
6.33.49-003	3 4
6.33.49-004	5 6
23-01-11	3 7
23-02-34	3 7
23-03-13	3 7
23-03-23	2
23-03-48	2 7
23-03-56	3 7
23-06-04	3 7
23-06-23	3 7
23-07-26	2 7
23-08-55	2 3
Dzherlo	3
Olympus	3
PC 7146-16	3
Kordia	2
Cristobalina	2
Vittoria	2
FR20T047	2 3
FR13T004	2 6
FR13T071	2 3
FR31T121	2 6
FR32T087	3 5
FR32T088	2 3
FR32T093	5 6
FR20T045	2 4
FR26T117	6
FR29T115	2 6
PC 9816-005	3
PC 9816-023	3
PC 9816-041	3 6
PC 9816-059	3 6
PC 9816-083	3 6
PC 9816-103	3 6
PC 9816-105	3
PC 9816-106	3 6
PC 9816-112	3
PC 9816-078	3
PC 9819-005	3 6
PC 9819-031	3
PC 9819-038	3 6
PC 9814-025	3
PC 9814-078	3 6
PC 9814-103	3
PC 9814-105	3
PC 9814-026	3 6
PC 9814-028	3
PC 9814-055	3
PC 9814-062	3 6
PC 9814-063	3 6
PC 9814-068	3
PC 9814-071	3
PC 9814-076	3 6
PC 9819-034	3 6
PC 9816-042	3 6
Emperor Francis	2 3
Black Republican	3 6
Krupnoplodnaya	2 3
Early Burlat	2 3
Venus	2 6
Moreau	2 3
Index	2 6
Sunburst	2 3
6.14.6-008	3 4
FR02T062	2 3
FR02T063	2 3
5.14.23.001	2 6
6.16.44-005	2 3
6.23.44-001	2
6.23.44-002	2
6.23.55-006	2
6.23.55-010	2
6.23.6-002	2
6.23.6-003	2
6.16.44-001	2 3
6.16.44-002	2 3
6.16.44-003	2
6.28.44-001	2 6
6.28.44-002	2
6.4.44-003	2 3
6.4.44-004	2 6
6.4.44-006	2 3
6.4.44-007	2 6
6.4.44-009	2 6
6.4.44-010	3 5
6.4.45-001	3 5
4.3.1-004	2 3
4.3.1-009	2 6
5.3.1-008	2 3
5.3.1-010	2 3
5.3.1-015	2 3
5.3.1-016	2 3
5.3.1-017	2 3
6.30.50-002	3
6.14.6-003	3
6.28.45-001	2 3
FR09T089	2 3
6.12.45-001	2 3
6.12.45-002	2 3
6.12.45-003	2 3
6.12.45-004	2 3
6.12.45-005	2 3
6.12.45-007	2 3
6.12.45-008	2 3
6.12.45-009	2 3
6.12.45-010	2 3
6.14.45-001	2 3
6.14.45-003	2 3
6.14.45-004	2 3
6.14.45-005	2 6
6.14.45-006	2 6
6.14.45-007	2 6
6.14.45-008	2 3
6.14.45-009	2 3
6.28.45-002	2
6.14.6-001	3
6.14.6-002	3
6.14.6-004	3 6
6.14.6-005	3 6
6.14.6-006	3
6.14.6-007	3
6.14.6-010	3 6
6.23.6-004	2 3
6.23.6-005	2 3
6.23.6-007	2 3
6.23.6-008	2 3
6.23.6-012	2 3
6.28.44-005	3 6
6.28.55-006	2 3
6.28.55-007	2 3
6.23.6-001	2 3
6.23.6-006	2
6.23.6-009	2 3
6.4.44-001	2 3
6.4.6-001	2 3
FR04T029	3 6
FR08T074	3
6.28.55-002	2 6
FR01T050	2
5.10.25-001	2 6
5.10.25-002	2 6
5.16.25-002	2
5.16.25-003	2 3
5.16.25-004	2 3
5.16.25-005	2
5.16.25-009	2
5.16.25-010	2 3
5.16.25-013	3
5.18.25-005	2 6
4.3.1-008	2 6
5.3.1-005	2 6
FR09T037	2 3
6.29.50-001	3 4
6.29.50-002	2 3
6.29.50-003	2 3
6.29.50-004	3 4
6.29.50-005	2 3
6.29.50-007	2 3
6.29.50-008	4 6
6.30.50-004	2 3
6.30.50-005	4 6
6.31.50-001	3 4
6.31.50-002	2 6
6.31.50-003	2 6
6.31.50-004	2 6
6.31.50-005	2 6
6.32.50-001	4 6
6.32.50-002	2 6
6.32.50-003	2 3
6.32.50-004	4 6
6.32.50-005	4 6
6.32.50-006	4 6
6.32.50-007	2 6
6.32.50-008	4 6
6.33.50-001	2 3
5.10.26-001	3 6
5.10.26-002	2 3
5.10.26-003	2
5.10.26-004	2 3
5.10.26-005	2 3
5.10.26-007	3 6
5.10.26-008	2 3
5.13.26-001	3
5.13.26-002	3
5.13.26-003	3
5.13.26-004	3
5.13.26-005	2 3
5.13.26-006	3
5.13.26-007	3
5.13.26-009	3
5.14.26-001	3
5.14.26-002	3
5.14.26-003	2 6
5.16.26-001	2 3
5.16.26-002	2 3
5.16.26-003	2 3
5.16.40-001	2 3
5.18.26-001	2
5.18.26-002	2
FR06T097	3 6
FR07T026	2 3
6.28.44-003	3 6
AA	3
PC 9816-069	3 6
PC 9816-079	3 6
PC 9816-096	3 6
PC 9816-104	3 6
PC 9816-114	3 6
PC 9817-097	3 6
4.18.15-010	2 6
4.18.15-042	4 6
4.18.15-047	2 6
4.18.15-048	2 6
4.3.1-003	2 4
4.3.1-005	2 4
4.3.1-006	2 4
4.3.1-007	2
5.3.1-009	2 4
5.3.1-011	2
5.3.1-012	2 4
5.3.1-013	2 4
5.3.1-014	2
5.4.15-001	2 3
5.4.15-002	2 6
5.4.15-003	2 3
FR01T070	2
FR49T083	2
5.16.17-003	3
5.16.25-006	3
5.16.25-008	3
5.16.25-012	3
5.20.6-001	2 3
6.16.44-008	2
6.4.45-003	3
6.4.6-004	3
6.4.6-006	3
6.4.6-007	3
6.4.6-008	2
6.4.6-009	2 3
5.16.17-001	2 3
5.16.17-004	3
6.14.17-001	3
6.14.17-002	3 6
6.14.17-003	3
6.14.17-004	3 6
6.14.17-005	3 6
FR02T024	2 3
4.14.17-001	6
5.13.26-008	2 3
6.28.44-004	2 6
4.3.1-001	2 3
5.3.1-007	2 3
5.3.1-018	2 6
5.10.40-001	2 6
5.10.40-002	2 6
5.10.40-003	2
5.10.40-004	2 6
5.10.40-005	2
5.10.40-007	2
5.10.40-008	2
5.10.40-009	2 6
5.10.40-010	2 6
5.10.40-011	6
5.10.40-012	2 6
5.10.40-013	2 6
5.10.40-014	6
5.10.40-015	2
5.10.40-016	2 6
5.10.40-017	2 6
5.13.40-002	2 3
5.13.40-003	3 6
5.13.40-004	3 6
5.16.40-003	2 6
5.16.40-004	2
6.30.50-001	3 6
6.30.50-003	3 6
6.10.55-001	2
6.10.55-002	2 6
6.10.55-003	2
6.10.55-004	2 6
6.10.55-005	2 6
6.10.55-006	2 6
6.10.55-007	2 6
6.10.55-008	2 6
6.10.55-009	2 6
6.10.55-010	2 6
6.16.55-001	2
6.16.55-002	2 3
6.23.17-001	2
6.23.55-002	2
6.23.55-005	2
6.23.55-007	2
6.23.55-008	2
6.28.55-001	2
6.28.55-003	2
6.28.55-004	2
6.28.55-005	2 6
5.13.40-001	2
5.16.25-001	3
5.18.25-004	2 6
5.3.1-006	3
6.16.44-004	2 3
6.16.44-006	2
6.16.44-007	2 3
6.16.44-009	2 3
6.23.17-003	2 3
6.23.17-004	2
Bertiolle	2 5
Napoleon	3

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Pav-HB-07-1	Sweet Cherry-RosBREED-1.6K-2019	7	0	4.01

Projects


Project Name
RosBREED_Sweet_Cherry_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11
RosBREED_snp_sweet_cherry_Pp7_03526027	A	A	A	B	A	B	A	A	A	A
RosBREED_snp_sweet_cherry_Pp7_04261930	A	B	A	A	B	B	A	B	B	-
RosCOS3342-211_snp_sweet_cherry_Pp7_04466543	B	A	A	B	B	B	B	A	-	B
RosCOS3729-417_snp_sweet_cherry_Pp7_04467254	A	B	B	A	A	A	B	A	-	A

Alignments

Feature Name	Type	Location	Analysis
Pp07	chromosome	Pp07:367571..1309524.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)