Construction of an Integrated High Density Simple Sequence Repeat Linkage Map in Cultivated Strawberry (Fragaria x ananassa) and its Applicability.

Publication Overview
TitleConstruction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability
AuthorsIsobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S
TypeJournal Article
Journal NameDNA research : an international journal for rapid publication of reports on genes and genomes
Volume20
Issue1
Year2013
Page(s)79-92
CitationIsobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S. Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability. DNA research : an international journal for rapid publication of reports on genes and genomes. 2013 Feb; 20(1):79-92.

Abstract

The cultivated strawberry (Fragaria × ananassa) is an octoploid (2n = 8x = 56) of the Rosaceae family whose genomic architecture is still controversial. Several recent studies support the AAA'A'BBB'B' model, but its complexity has hindered genetic and genomic analysis of this important crop. To overcome this difficulty and to assist genome-wide analysis of F. × ananassa, we constructed an integrated linkage map by organizing a total of 4474 of simple sequence repeat (SSR) markers collected from published Fragaria sequences, including 3746 SSR markers [Fragaria vesca expressed sequence tag (EST)-derived SSR markers] derived from F. vesca ESTs, 603 markers (F. × ananassa EST-derived SSR markers) from F. × ananassa ESTs, and 125 markers (F. × ananassa transcriptome-derived SSR markers) from F. × ananassa transcripts. Along with the previously published SSR markers, these markers were mapped onto five parent-specific linkage maps derived from three mapping populations, which were then assembled into an integrated linkage map. The constructed map consists of 1856 loci in 28 linkage groups (LGs) that total 2364.1 cM in length. Macrosynteny at the chromosome level was observed between the LGs of F. × ananassa and the genome of F. vesca. Variety distinction on 129 F. × ananassa lines was demonstrated using 45 selected SSR markers.

Features
This publication contains information about 4,482 features:
Feature NameUniquenameType
FAES0248FAES0248genetic_marker
FAES0249FAES0249genetic_marker
FAES0250FAES0250genetic_marker
FAES0251FAES0251genetic_marker
FAES0252FAES0252genetic_marker
FAES0253FAES0253genetic_marker
FAES0254FAES0254genetic_marker
FAES0255FAES0255genetic_marker
FAES0256FAES0256genetic_marker
FAES0257FAES0257genetic_marker
FAES0258FAES0258genetic_marker
FAES0259FAES0259genetic_marker
FAES0260FAES0260genetic_marker
FAES0261FAES0261genetic_marker
FAES0262FAES0262genetic_marker
FAES0263FAES0263genetic_marker
FAES0264FAES0264genetic_marker
FAES0265FAES0265genetic_marker
FAES0266FAES0266genetic_marker
FAES0267FAES0267genetic_marker
FAES0268FAES0268genetic_marker
FAES0269FAES0269genetic_marker
FAES0270FAES0270genetic_marker
FAES0271FAES0271genetic_marker
FAES0272FAES0272genetic_marker

Pages

Stocks
This publication contains information about 7 stocks:
Stock NameUniquenameType
SACHINOKASACHINOKAcultivar
02-1902-19breeding_research_material
akihimeakihimecultivar
KaorinoKaorinocultivar
02129210212921cultivar
02-19_x_Sachinoka02-19_x_Sachinokacultivar
Kaorino_x_AkihimeKaorino_x_Akihimecultivar
Cross References
This publication is also available in the following databases:
DatabaseAccession
PMID: PubMedPMID:23239709
PMID: PubMedPMID:23248204