Construction of an Integrated High Density Simple Sequence Repeat Linkage Map in Cultivated Strawberry (Fragaria x ananassa) and its Applicability.

Publication Overview
TitleConstruction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability
AuthorsIsobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S
TypeJournal Article
Journal NameDNA research : an international journal for rapid publication of reports on genes and genomes
Volume20
Issue1
Year2013
Page(s)79-92
CitationIsobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S. Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability. DNA research : an international journal for rapid publication of reports on genes and genomes. 2013 Feb; 20(1):79-92.

Abstract

The cultivated strawberry (Fragaria × ananassa) is an octoploid (2n = 8x = 56) of the Rosaceae family whose genomic architecture is still controversial. Several recent studies support the AAA'A'BBB'B' model, but its complexity has hindered genetic and genomic analysis of this important crop. To overcome this difficulty and to assist genome-wide analysis of F. × ananassa, we constructed an integrated linkage map by organizing a total of 4474 of simple sequence repeat (SSR) markers collected from published Fragaria sequences, including 3746 SSR markers [Fragaria vesca expressed sequence tag (EST)-derived SSR markers] derived from F. vesca ESTs, 603 markers (F. × ananassa EST-derived SSR markers) from F. × ananassa ESTs, and 125 markers (F. × ananassa transcriptome-derived SSR markers) from F. × ananassa transcripts. Along with the previously published SSR markers, these markers were mapped onto five parent-specific linkage maps derived from three mapping populations, which were then assembled into an integrated linkage map. The constructed map consists of 1856 loci in 28 linkage groups (LGs) that total 2364.1 cM in length. Macrosynteny at the chromosome level was observed between the LGs of F. × ananassa and the genome of F. vesca. Variety distinction on 129 F. × ananassa lines was demonstrated using 45 selected SSR markers.

Features
This publication contains information about 4,482 features:
Feature NameUniquenameType
FAES0348FAES0348genetic_marker
FAES0349FAES0349genetic_marker
FAES0350FAES0350genetic_marker
FAES0351FAES0351genetic_marker
FAES0352FAES0352genetic_marker
FAES0353FAES0353genetic_marker
FAES0354FAES0354genetic_marker
FAES0355FAES0355genetic_marker
FAES0356FAES0356genetic_marker
FAES0357FAES0357genetic_marker
FAES0358FAES0358genetic_marker
FAES0359FAES0359genetic_marker
FAES0360FAES0360genetic_marker
FAES0361FAES0361genetic_marker
FAES0362FAES0362genetic_marker
FAES0363FAES0363genetic_marker
FAES0364FAES0364genetic_marker
FAES0365FAES0365genetic_marker
FAES0366FAES0366genetic_marker
FAES0367FAES0367genetic_marker
FAES0368FAES0368genetic_marker
FAES0369FAES0369genetic_marker
FAES0370FAES0370genetic_marker
FAES0371FAES0371genetic_marker
FAES0372FAES0372genetic_marker

Pages

Stocks
This publication contains information about 7 stocks:
Stock NameUniquenameType
SACHINOKASACHINOKAcultivar
02-1902-19breeding_research_material
akihimeakihimecultivar
KaorinoKaorinocultivar
02129210212921cultivar
02-19_x_Sachinoka02-19_x_Sachinokacultivar
Kaorino_x_AkihimeKaorino_x_Akihimecultivar
Cross References
This publication is also available in the following databases:
DatabaseAccession
PMID: PubMedPMID:23239709
PMID: PubMedPMID:23248204