Construction of an Integrated High Density Simple Sequence Repeat Linkage Map in Cultivated Strawberry (Fragaria x ananassa) and its Applicability.

Publication Overview
TitleConstruction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability
AuthorsIsobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S
TypeJournal Article
Journal NameDNA research : an international journal for rapid publication of reports on genes and genomes
Volume20
Issue1
Year2013
Page(s)79-92
CitationIsobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S. Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability. DNA research : an international journal for rapid publication of reports on genes and genomes. 2013 Feb; 20(1):79-92.

Abstract

The cultivated strawberry (Fragaria × ananassa) is an octoploid (2n = 8x = 56) of the Rosaceae family whose genomic architecture is still controversial. Several recent studies support the AAA'A'BBB'B' model, but its complexity has hindered genetic and genomic analysis of this important crop. To overcome this difficulty and to assist genome-wide analysis of F. × ananassa, we constructed an integrated linkage map by organizing a total of 4474 of simple sequence repeat (SSR) markers collected from published Fragaria sequences, including 3746 SSR markers [Fragaria vesca expressed sequence tag (EST)-derived SSR markers] derived from F. vesca ESTs, 603 markers (F. × ananassa EST-derived SSR markers) from F. × ananassa ESTs, and 125 markers (F. × ananassa transcriptome-derived SSR markers) from F. × ananassa transcripts. Along with the previously published SSR markers, these markers were mapped onto five parent-specific linkage maps derived from three mapping populations, which were then assembled into an integrated linkage map. The constructed map consists of 1856 loci in 28 linkage groups (LGs) that total 2364.1 cM in length. Macrosynteny at the chromosome level was observed between the LGs of F. × ananassa and the genome of F. vesca. Variety distinction on 129 F. × ananassa lines was demonstrated using 45 selected SSR markers.

Features
This publication contains information about 4,482 features:
Feature NameUniquenameType
FAES0473FAES0473genetic_marker
FAES0474FAES0474genetic_marker
FAES0475FAES0475genetic_marker
FAES0476FAES0476genetic_marker
FAES0477FAES0477genetic_marker
FAES0478FAES0478genetic_marker
FAES0479FAES0479genetic_marker
FAES0480FAES0480genetic_marker
FAES0481FAES0481genetic_marker
FAES0482FAES0482genetic_marker
FAES0483FAES0483genetic_marker
FAES0484FAES0484genetic_marker
FAES0485FAES0485genetic_marker
FAES0486FAES0486genetic_marker
FAES0487FAES0487genetic_marker
FAES0488FAES0488genetic_marker
FAES0489FAES0489genetic_marker
FAES0490FAES0490genetic_marker
FAES0491FAES0491genetic_marker
FAES0492FAES0492genetic_marker
FAES0493FAES0493genetic_marker
FAES0494FAES0494genetic_marker
FAES0495FAES0495genetic_marker
FAES0496FAES0496genetic_marker
FAES0497FAES0497genetic_marker

Pages

Stocks
This publication contains information about 7 stocks:
Stock NameUniquenameType
SACHINOKASACHINOKAcultivar
02-1902-19breeding_research_material
akihimeakihimecultivar
KaorinoKaorinocultivar
02129210212921cultivar
02-19_x_Sachinoka02-19_x_Sachinokacultivar
Kaorino_x_AkihimeKaorino_x_Akihimecultivar
Cross References
This publication is also available in the following databases:
DatabaseAccession
PMID: PubMedPMID:23239709
PMID: PubMedPMID:23248204