NCBI annotated gene vs. genes from the original genome assembly
Overview
Blat was performed with NCBI annotated sequences against the sequences from the original genome assemblies with 90% identity and the best hit (lowest evalue) was chosen. The table below provides the source files, % of sequences in the query with match, and the result files. The result files in each section provides blat results with hyperlinks to NCBI and GDR gene/protein pages. Malus X Domestica
Blat was performed with NCBI annotated sequences against the sequences from the original genome assemblies with 90% identity and the best hit (lowest evalue) was chosen. The table below provides the source files, % of sequences in the query with match, and the result files. The result files below provides blat results with hyperlinks to NCBI and GDR gene/protein pages.
MDP_vs_ncbi_by_cds_with_loc.xlsx: Blast results performed by FEM (Fondazione Edmund Mach) Fragaria Vesca
Blat was performed with NCBI annotated sequences against the sequences from the original genome assemblies with 90% identity and the best hit (lowest evalue) was chosen. The table below provides the source files, % of sequences in the query with match, and the result files. The result files below provides blat results with hyperlinks to NCBI and GDR gene/protein pages.
Prunus Persica
Blat was performed with NCBI annotated sequences against the sequences from the original genome assemblies with 90% identity and the best hit (lowest evalue) was chosen. The table below provides the source files, % of sequences in the query with match, and the result files. The result files below provides blat results with hyperlinks to NCBI and GDR gene/protein pages.
Links
Malus x domestica |