Publication Overview
TitleConstruction of a High-Density Simple Sequence Repeat Consensus Genetic Map for Pear (Pyrus spp.)
AuthorsChen H, Song Y, Li L, Khan M, Korban S, Wu J, Zhang S
TypeJournal Article
Journal NamePlant Molecular Biology Reporter
Volume33
Issue2
Year2015
Page(s)316–325
CitationChen H, Song Y, Li L, Khan M, Korban S, Wu J, Zhang S. Construction of a High-Density Simple Sequence Repeat Consensus Genetic Map for Pear (Pyrus spp.). Plant Molecular Biology Reporter. 2015; 33(2):316–325.

Abstract

As an important fruit crop that is widely grown commercially in temperate regions of the world, pear (Pyrus) is a target for pursuing efficient breeding strategies. Construction of a reliable and dense genetic linkage map is critical for undertaking marker-assisted breeding. In this study, a population of 56 F1 seedlings of ‘Bayuehong’ × ‘Dangshansuli’ was used to construct a high-density simple sequence repeat (SSR)-based genetic linkage map. A total of 1,756 SSR markers, including 1,341 newly designed SSRs based on whole-genome sequencing of an Asiatic pear along with 415 previously reported SSRs, were first evaluated for polymorphism. Based on 894 SSRs demonstrating polymorphism, a consensus genetic map consisting of 734 loci distributed along all 17 linkage groups (LG) was constructed, with a total length of 1,661.4 cM and with an average marker interval of 2.26 cM. Comparisons among different maps of pear and apple were then made based on positions of previously mapped SSR markers on the consensus map. As a result, homologous linkage groups LG3 and LG11, LG5 and LG10, LG9 and LG17, LG13 and LG16, LG8 and LG15 have been identified. This high-density SSR map along with a set of SSR markers covering the whole genome of pear will greatly facilitate integration of independent maps, aid in pursuing comparative genome studies, and in evaluation of different germplasm in future genetic and breeding studies.
Features
This publication contains information about 437 features:
Feature NameUniquenameType
NAUpy07mNAUpy07mgenetic_marker
NAUpy07sNAUpy07sgenetic_marker
NAUpy08aNAUpy08agenetic_marker
NAUpy08bNAUpy08bgenetic_marker
NAUpy08cNAUpy08cgenetic_marker
NAUpy08fNAUpy08fgenetic_marker
NAUpy08tNAUpy08tgenetic_marker
NAUpy09eNAUpy09egenetic_marker
NAUpy09tNAUpy09tgenetic_marker
NAUpy09uNAUpy09ugenetic_marker
NAUpy09vNAUpy09vgenetic_marker
NAUpy10dNAUpy10dgenetic_marker
NAUpy10eNAUpy10egenetic_marker
NAUpy10hNAUpy10hgenetic_marker
NAUpy10rNAUpy10rgenetic_marker
NAUpy10tNAUpy10tgenetic_marker
NAUpy10uNAUpy10ugenetic_marker
NAUpy11aNAUpy11agenetic_marker
NAUpy11fNAUpy11fgenetic_marker
NAUpy11mNAUpy11mgenetic_marker
NAUpy11nNAUpy11ngenetic_marker
NAUpy11rNAUpy11rgenetic_marker
NAUpy11sNAUpy11sgenetic_marker
NAUpy11uNAUpy11ugenetic_marker
NAUpy11wNAUpy11wgenetic_marker

Pages

Featuremaps
This publication contains information about 5 maps:
Map Name
Pear-BD-F1-2015
Pear-Bayuehong-F1-2015
Pear-Dangshansuli-F1-2015
Pear-Bartlett-F1-2007
Pear-La_France-F1-2007
Stocks
This publication contains information about 3 stocks:
Stock NameUniquenameType
Bayuehong_x_DangshansuliBayuehong_x_Dangshansulipopulation
DangshansuliDangshansuliaccession
BayuehongBayuehongaccession