rubus_GDR_reftransV2_0000311, rubus_GDR_reftransV2_0000311 (contig) Rubus spp.

Overview


Name	rubus_GDR_reftransV2_0000311
Unique Name	rubus_GDR_reftransV2_0000311
Type	contig
Organism	Rubus all species (Rubus)
Sequence length	535

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
BraspberryS0036	supercontig	rubus_GDR_reftransV2_0000311:13..535 . BraspberryS0036:261640..262161 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Rubus GDR RefTrans V2	2017-05-10
Homology Analysis for Rubus GDR RefTrans V2 vs SwissProt	2017-05-19
Homology Analysis for Rubus GDR RefTrans V2 vs TrEMBL	2017-05-22
InterProScan analysis for Rubus GDR RefTrans V2	2017-05-25

Homology

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BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Match: SPH1_ARATH (S-protein homolog 1 OS=Arabidopsis thaliana GN=SPH1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.914e-20
Identity = 54/148 (36.49%), Postives = 74/148 (50.00%), Query Frame = 3

Query:   42 LFILCAAVALSSP---RPGNSAETNDWGVDFTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWET*W 476
            L  +C ++AL+       G +   +      ++W V VVNG      L IHCKS  DDLG   L   + F+W+F  N+  +T F C  +KDN H + +VFW    D  L +RC +K C W AK DG+Y+ N   G  D     WE  W
Sbjct:    8 LLAICFSLALTCQDHVLVGGTTTRDIIVPKISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNKDNGHMNVNVFWD---DVILFHRCGWKNCIWTAKTDGLYLWNSASG-EDVLSRKWEVGW 151

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Match: SPH74_ARATH (S-protein homolog 74 OS=Arabidopsis thaliana GN=SPH74 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.773e-16
Identity = 45/118 (38.14%), Postives = 62/118 (52.54%), Query Frame = 3

Query:  123 FTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWET*W 476
             ++W V V NG      L IHCKS  +DLG   L     F+W+F  N+  +T F C   KD+ H +  VFW    D  L +RC++K C W AK+DG+Y+ N   G  D     W++ W
Sbjct:   38 ISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSKDDGHMNVKVFWD---DVILFHRCDWKNCVWTAKNDGLYLWNSAIG-EDVLSEKWKSGW 151

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Match: SPH2_ARATH (S-protein homolog 2 OS=Arabidopsis thaliana GN=SPH2 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 6.598e-10
Identity = 39/137 (28.47%), Postives = 60/137 (43.80%), Query Frame = 3

Query:   21 RAFTGIALFILCAAVALSS-------PRPGNSAETNDWGVDFTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDG 410
            + +  + + I+     LS        P P + + TN      +K  V + N  G Q  L  HCKS  DDLG  TL PG  +++ F     G T + C F   N+  SFD++  + +D     +C    C W  + +G
Sbjct:    5 KQYLSLFILIIFITTKLSQADHKNDIPVPNDPSSTNS-VFPTSKRTVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESHSFDIY-KDHRDSGGDNKCESDRCVWKIRRNG 139

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Match: SPH24_ARATH (S-protein homolog 24 OS=Arabidopsis thaliana GN=SPH24 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.672e-9
Identity = 32/81 (39.51%), Postives = 39/81 (48.15%), Query Frame = 3

Query:  174 LEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIY 416
            L IHCKS  DDLG H L  G  F W F VN   +T + C F +          +  ++D    YRC    C W A+ DGIY
Sbjct:   58 LGIHCKSRDDDLGFHILAKGELFGWKFHVNFCYSTLYFCGFSQGQMKKGVFEIYRANRDF---YRC--ANCTWKAEKDGIY 133

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Match: SPH28_ARATH (S-protein homolog 28 OS=Arabidopsis thaliana GN=SPH28 PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.395e-8
Identity = 36/98 (36.73%), Postives = 46/98 (46.94%), Query Frame = 3

Query:  174 LEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIY-IRNIPEGNRDEFFHGW 464
            L IHCKS  DDLG H L  G  F W F VN   +T   C F +   +    + +  S+D    YRC    C W A+ DG +   +IP   R   F+ W
Sbjct:   58 LAIHCKSRDDDLGFHILAKGELFGWKFHVNFRYSTLCFCGFSQRQINKGVFIIYVASRDF---YRC--ANCTWKAEKDGFHGYGDIP--TRGYLFYNW 148

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Match: SPH6_ARATH (S-protein homolog 6 OS=Arabidopsis thaliana GN=SPH6 PE=3 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 4.581e-8
Identity = 35/99 (35.35%), Postives = 48/99 (48.48%), Query Frame = 3

Query:  174 LEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDN-QHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIY-IRNIPEGNRDEFFHGW 464
            L +HCKS  DD G H L  G  + W F VN   +T + C F ++  +   FD++           RC  + C W AK+DGIY    IP+ N    F+ W
Sbjct:   44 LGVHCKSRDDDHGFHILQKGGLYGWMFYVNFMNSTLYFCGFSQEQVKKGVFDIYKAVRDSS----RC--RNCTWEAKEDGIYGYGEIPKKN--PLFYKW 134

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Match: S1_PAPRH (Self-incompatibility protein S1 OS=Papaver rhoeas GN=S1 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.765e-8
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 3

Query:  138 VHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHA-SFDVFWPESKDHWLRYRCNFKECFWIAKDDGIY 416
            V ++N  G  R++ IHC+S  +DL   T+T G D ++ FR +   TT F CD   D +    F  +  +  D     RC+  +C W   DDG+Y
Sbjct:   26 VRIMNRRGNGRSIGIHCRSKDNDLQNQTVTSGHDMSFSFREDFFHTTHFYCDLQWDKETKFGFYSYQAKRDDDG---RCS-SQCLWKIMDDGLY 115

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Match: SPH3_ARATH (S-protein homolog 3 OS=Arabidopsis thaliana GN=SPH3 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.096e-7
Identity = 26/69 (37.68%), Postives = 35/69 (50.72%), Query Frame = 3

Query:  126 TKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVF 332
            T   V + N  G    L +HCKS  DDLG   L P   +++ FR ++ GTT F C F    Q   FD++
Sbjct:   35 TSKMVRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSKRFDIY 103

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Match: SPH5_ARATH (S-protein homolog 5 OS=Arabidopsis thaliana GN=SPH5 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.285e-7
Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 3

Query:  138 VHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVF 332
            V + N  GG   L IHCKS  DDLG H +    ++++ F+ NL  +T F C F  D+Q  SFD++
Sbjct:   31 VTMTNLIGGP-PLTIHCKSKQDDLGIHVVPFKQEYHFKFQPNLWKSTLFFCSFQWDSQFKSFDIY 94

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Match: SPH29_ARATH (S-protein homolog 29 OS=Arabidopsis thaliana GN=SPH29 PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.358e-7
Identity = 33/84 (39.29%), Postives = 39/84 (46.43%), Query Frame = 3

Query:  123 FTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCN 374
            F K  V V N    Q  L I C+S  DDLG H L  G  F W FR +   TT F+C F  +N    FD +    +D    Y CN
Sbjct:   28 FAKTVVTVTNNISPQTTLTISCRSKDDDLGEHLLLHGQAFLWKFRPSWFRTTLFTCKFLWNNNVKWFDTY-RSDRDQGHCYSCN 110

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 9.605e-42
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 3

Query:   63 VALSSPRPGNSAETNDWGVDFTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWET 470
            +ALS+P  G+       G+ + KWHVHVVN  G  + L  HCKS  DDLG   L PG++FNW F+ N  GTT + C    D +HA+ DVFW E    WL+YRCN+K+C WIAKDDGIYI+ IPE NRDEF H WE 
Sbjct:    2 LALSAPCLGSP------GIRYNKWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWCYMSTDQKHAALDVFWVEGDHSWLQYRCNWKDCIWIAKDDGIYIKIIPE-NRDEFSHKWEV 130

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Match: M5VN50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024219mg PE=4 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.235e-34
Identity = 64/109 (58.72%), Postives = 75/109 (68.81%), Query Frame = 3

Query:  156 FGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFW--PESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWET*W 476
             G  + L  HCKS  DDLG   + PG++FNW F+ N  GTT F C+ H ++QHA+F VFW   ESK  WL YRCN+KECFW+AKDDGIYIRN PEG RDE  H WE  W
Sbjct:    1 MGASKTLVAHCKSKDDDLGIRDVLPGNEFNWGFKENFGGTTLFWCNIHNNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKDDGIYIRNTPEG-RDELQHQWEPGW 108

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Match: A0A0D2U1W3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G390100 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.367e-33
Identity = 70/155 (45.16%), Postives = 88/155 (56.77%), Query Frame = 3

Query:   27 FTGIALFILCAAVALSSPRPGNSAETNDWGVD--------FTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWE 467
            +  +  FIL  A+A++S    +S+E N  G D        F  WH++ VNG    + L +HCKS  DDLG H LT GS+F W FR    G T F C    DN HASF  FW       L   C++  CFWIAKDDGIYIRNIP+ NRD+++  WE
Sbjct:    5 YKNVLCFILVQAIAITSLITLSSSEPNKGGHDNSPWIHPWFKTWHIYAVNGLSQDQTLLVHCKSKDDDLGIHNLTVGSEFTWKFRPRFFGGTLFWCYMAYDNLHASFKAFWDNQA---LYNVCDWGTCFWIAKDDGIYIRNIPK-NRDDYYCNWE 155

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Match: A0A0D2U1P1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G389900 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.995e-33
Identity = 70/155 (45.16%), Postives = 88/155 (56.77%), Query Frame = 3

Query:   27 FTGIALFILCAAVALSSPRPGNSAETNDWGVD--------FTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWE 467
            +  +  FIL  A+A++S    +S+E N  G D        F  WH++ VNG    + L +HCKS  DDLG H LT GS+F W FR    G T F C    DN HASF  FW       L   C++  CFWIAKDDGIYIRNIP+ NRD+++  WE
Sbjct:    5 YKNVLCFILVQAIAITSLITLSSSEPNKGGHDNSRWIHPWFKTWHIYAVNGISKDQTLLVHCKSKDDDLGIHNLTVGSEFTWKFRPRFFGGTLFWCYMAYDNLHASFKAFWDNQV---LYNLCDWGTCFWIAKDDGIYIRNIPK-NRDDYYCNWE 155

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Match: A0A1U8HZ85_GOSHI (uncharacterized protein LOC107890872 OS=Gossypium hirsutum GN=LOC107890872 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.995e-33
Identity = 70/155 (45.16%), Postives = 88/155 (56.77%), Query Frame = 3

Query:   27 FTGIALFILCAAVALSSPRPGNSAETNDWGVD--------FTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWE 467
            +  +  FIL  A+A++S    +S+E N  G D        F  WH++ VNG    + L +HCKS  DDLG H LT GS+F W FR    G T F C    DN HASF  FW       L   C++  CFWIAKDDGIYIRNIP+ NRD+++  WE
Sbjct:    5 YKNVLCFILVQAIAITSLITLSSSEPNKGGHDNSRWIHPWFKTWHIYAVNGISKDQTLLVHCKSKDDDLGIHNLTVGSEFTWKFRPRFFGGTLFWCYMAYDNLHASFKAFWDNQV---LYNLCDWGTCFWIAKDDGIYIRNIPK-NRDDYYCNWE 155

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Match: A0A1U8MZ01_GOSHI (uncharacterized protein LOC107942823 OS=Gossypium hirsutum GN=LOC107942823 PE=4 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.440e-32
Identity = 70/155 (45.16%), Postives = 88/155 (56.77%), Query Frame = 3

Query:   27 FTGIALFILCAAVALSSPRPGNSAETNDWGVD--------FTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWE 467
            +  +  FIL  A+A++S    +S+E N  G D        F  WH++ VN     + L +HCKS  DDLG H LT GS+F W FR    G T F C    DN HASF  FW    D  L   C++  CFWIAKDDGIYIRNIP+ NRD+++  WE
Sbjct:    5 YKNVLCFILVQAIAITSLITLSSSEPNKGGHDNSRWIHPWFKTWHIYAVNELSKDQTLLVHCKSKDDDLGIHNLTVGSEFTWKFRPRFFGGTLFWCYMAYDNLHASFKAFW---DDQALYNVCDWGTCFWIAKDDGIYIRNIPK-NRDDYYCNWE 155

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Match: A0A1U8N1Q7_GOSHI (uncharacterized protein LOC107942542 OS=Gossypium hirsutum GN=LOC107942542 PE=4 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.354e-31
Identity = 62/152 (40.79%), Postives = 87/152 (57.24%), Query Frame = 3

Query:   36 IALFILCAAVALSSPRPGNSAETNDWGVD--------FTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWE 467
            I  F+L  A+ +      +S E +   +D        +  WHVH VN     + L +HCKS  DDLG   LT G++FNW FR  + G T F C    DN HA+F VFW +     L  +CN+ +C+WIA+DDGIY+++IP G RDE+++ WE
Sbjct:    8 ITFFMLVQAITIIPLIASSSLEPDQGHLDDNSRLSLWYKTWHVHTVNDLSNNKTLLVHCKSRDDDLGIQNLTVGTEFNWKFRPRIFGGTLFWCYMAYDNLHAAFKVFWEDPS---LYAKCNYGDCYWIARDDGIYLKDIP-GERDEYYYDWE 155

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Match: A0A0D2R2C1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224300 PE=4 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.825e-31
Identity = 62/152 (40.79%), Postives = 87/152 (57.24%), Query Frame = 3

Query:   36 IALFILCAAVALSSPRPGNSAETNDWGVD--------FTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWE 467
            I  F+L  A+ +      +S E +   +D        +  WHVH VN     + L +HCKS  DDLG H LT G++F W FR  + G T F C    DN HA+F VFW +     L  +CN+ +C+WIA+DDGIY+++IP G RDE+++ WE
Sbjct:    8 ITFFMLVQAITIIPLIASSSLEPDQGHLDDNSRLSLWYKTWHVHTVNDLSNNKTLLVHCKSRDDDLGIHNLTVGTEFYWKFRPRIFGGTLFWCYMAYDNLHAAFKVFWEDPS---LYAKCNYGDCYWIARDDGIYLKDIP-GERDEYYYDWE 155

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Match: A0A061DVJ1_THECC (S-protein, putative OS=Theobroma cacao GN=TCM_003118 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.993e-31
Identity = 59/115 (51.30%), Postives = 75/115 (65.22%), Query Frame = 3

Query:  123 FTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWE 467
            +  WH+H VNG   ++ L +HCKS  +DLG H LT G++FNW F+  + G T F C     N HASF VFW ++    L YRCN+K C W AKDDG+Y++NIPE N DEF H WE
Sbjct:   40 YKTWHIHAVNGMSHEKILFLHCKSGDNDLGIHNLTAGTEFNWKFKPQILGKTLFWCYMAWGNVHASFKVFWDDND---LFYRCNWKNCIWTAKDDGVYLKNIPE-NYDEFRHKWE 150

[Close]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Match: B9GR91_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s25380g PE=4 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.489e-30
Identity = 60/144 (41.67%), Postives = 79/144 (54.86%), Query Frame = 3

Query:   36 IALFILCAAVALSSPRPGNSAETNDWGVDFTKWHVHVVNGFGGQRALEIHCKSDIDDLGTHTLTPGSDFNWHFRVNLPGTTRFSCDFHKDNQHASFDVFWPESKDHWLRYRCNFKECFWIAKDDGIYIRNIPEGNRDEFFHGWE 467
            +   +L  A+  +      +A+      +FT WHV+VVNG    R L +HCKS  DDLG H L+ G +F W FR +    T F CD +KD+ HA F VFW    D  L Y+C +K C W  KDDGIYI+N+     DE +  WE
Sbjct:   12 VTALVLALAINFTHQYCFVAAKKERILYEFTTWHVYVVNGLSNNRELSVHCKSKDDDLGFHCLSAGDNFTWSFREDFFLRTLFWCDVNKDDAHAVFKVFW---HDVLLFYKCMWKNCVWTVKDDGIYIKNLDHDGLDELYRNWE 152

The following BLAST results are available for this feature:

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy Swiss-Prot
Analysis Date: 2017-05-19 (Homology Analysis for Rubus GDR RefTrans V2 vs SwissProt)
Total hits: 10


Match Name	E-value	Identity	Description
SPH1_ARATH	9.914e-20	36.49	S-protein homolog 1 OS=Arabidopsis thaliana GN=SPH...	[more]
SPH74_ARATH	1.773e-16	38.14	S-protein homolog 74 OS=Arabidopsis thaliana GN=SP...	[more]
SPH2_ARATH	6.598e-10	28.47	S-protein homolog 2 OS=Arabidopsis thaliana GN=SPH...	[more]
SPH24_ARATH	6.672e-9	39.51	S-protein homolog 24 OS=Arabidopsis thaliana GN=SP...	[more]
SPH28_ARATH	1.395e-8	36.73	S-protein homolog 28 OS=Arabidopsis thaliana GN=SP...	[more]
SPH6_ARATH	4.581e-8	35.35	S-protein homolog 6 OS=Arabidopsis thaliana GN=SPH...	[more]
S1_PAPRH	4.765e-8	34.04	Self-incompatibility protein S1 OS=Papaver rhoeas ...	[more]
SPH3_ARATH	1.096e-7	37.68	S-protein homolog 3 OS=Arabidopsis thaliana GN=SPH...	[more]
SPH5_ARATH	1.285e-7	41.54	S-protein homolog 5 OS=Arabidopsis thaliana GN=SPH...	[more]
SPH29_ARATH	1.358e-7	39.29	S-protein homolog 29 OS=Arabidopsis thaliana GN=SP...	[more]

BLAST of rubus_GDR_reftransV2_0000311 vs. ExPASy TrEMBL
Analysis Date: 2017-05-22 (Homology Analysis for Rubus GDR RefTrans V2 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
M5VWE5_PRUPE	9.605e-42	53.68	Uncharacterized protein (Fragment) OS=Prunus persi...	[more]
M5VN50_PRUPE	1.235e-34	58.72	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A0D2U1W3_GOSRA	3.367e-33	45.16	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2U1P1_GOSRA	3.995e-33	45.16	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A1U8HZ85_GOSHI	3.995e-33	45.16	uncharacterized protein LOC107890872 OS=Gossypium ...	[more]
A0A1U8MZ01_GOSHI	1.440e-32	45.16	uncharacterized protein LOC107942823 OS=Gossypium ...	[more]
A0A1U8N1Q7_GOSHI	1.354e-31	40.79	uncharacterized protein LOC107942542 OS=Gossypium ...	[more]
A0A0D2R2C1_GOSRA	1.825e-31	40.79	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DVJ1_THECC	3.993e-31	51.30	S-protein, putative OS=Theobroma cacao GN=TCM_0031...	[more]
B9GR91_POPTR	2.489e-30	41.67	Uncharacterized protein (Fragment) OS=Populus tric...	[more]

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InterPro

Analysis Name: InterProScan analysis for Rubus GDR RefTrans V2
Date Performed: 2017-05-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05938	Self-incomp_S1	coord: 40..139 e-value: 4.0E-27 score: 94.7
None	No IPR available	PANTHER	PTHR31232:SF14	S PROTEIN HOMOLOGUE 74-RELATED	coord: 12..150
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..151
None	No IPR available	SIGNALP_GRAM_NEGATIVE	SignalP-noTM	SignalP-noTM	coord: 1..26 score: 0.593
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..26 score: 0.668
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.845
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 12..150

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>rubus_GDR_reftransV2_0000311 ID=rubus_GDR_reftransV2_0000311; Name=rubus_GDR_reftransV2_0000311; organism=Rubus all species; type=contig; length=535bp
CTCGATCAGAAGCAAGAATGAGAGCTTTCACAGGCATTGCCCTTTTCATT
TTGTGTGCAGCTGTAGCCCTAAGTAGCCCGCGCCCTGGAAACTCTGCCGA
GACCAACGACTGGGGTGTTGATTTCACCAAGTGGCATGTGCACGTCGTGA
ACGGATTTGGTGGACAAAGAGCACTGGAGATCCACTGTAAGTCCGACATC
GACGACCTGGGCACCCATACTCTTACGCCTGGTTCCGATTTCAACTGGCA
TTTCAGAGTCAACTTGCCCGGGACAACACGTTTCTCTTGCGACTTCCATA
AGGACAATCAACACGCTTCATTCGATGTGTTTTGGCCGGAGAGTAAAGAT
CACTGGCTTCGGTACAGATGCAACTTTAAAGAGTGCTTTTGGATTGCAAA
AGACGATGGGATTTACATCAGAAACATCCCGGAAGGGAATCGTGACGAGT
TTTTTCATGGATGGGAAACATGATGGTGATATTGAAAGGGTCGTCATGTT
TTAATTAATTTGCACTTCCTGTGTCTTATTTGTTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1