rubus_GDR_reftransV2_0000564, rubus_GDR_reftransV2_0000564 (contig) Rubus spp.

Overview
Namerubus_GDR_reftransV2_0000564
Unique Namerubus_GDR_reftransV2_0000564
Typecontig
OrganismRubus all species (Rubus)
Sequence length677
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
BraspberryS0055supercontigrubus_GDR_reftransV2_0000564:1..677 .
BraspberryS0055:423293..424832 -
n/a
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Rubus GDR RefTrans V22017-05-10
Homology Analysis for Rubus GDR RefTrans V2 vs SwissProt2017-05-19
Homology Analysis for Rubus GDR RefTrans V2 vs TrEMBL2017-05-22
InterProScan analysis for Rubus GDR RefTrans V22017-05-25
Homology
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Match: MUTS2_LACSS (Endonuclease MutS2 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.468e-20
Identity = 74/229 (32.31%), Postives = 123/229 (53.71%), Query Frame = 1
Query:    7 NACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQ----EYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQHILATKTTDD----GEGSITTRRERRAVVKKSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKL 669
            NA MEFD   L+PTYR+L GVPGRSNA +I+ RLGLP ++VD A++L    S  ++ +I D+E  ++    EYQ L +E    L  + +LH++L  A ++  E     R  +M +  E A    + + +KA  + +  I  L+     +   I   +  D     G+    T  ++  V++++   + +  KVG+ V V+S G++ T++R   SK    VQ G +K+K+
Sbjct:  464 NASMEFDVATLQPTYRLLIGVPGRSNAFDISTRLGLPNSIVDQAKQLMNDESQDLNNMITDLENQRKAAETEYQALRHE----LTEATDLHQQLSTAYQQFFE----DRETEMTKAKEKA----NAIVEKAEVKADKVITKLRDMQMNQGAQIKENQLIDAKAELGQLHQETTLKKNKVLQRAK--RRQTLKVGDDVLVTSYGQRGTLIRQVDSK-NWEVQMGIIKMKI 677          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Match: MUTS2_FUSNN (Endonuclease MutS2 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.217e-20
Identity = 71/231 (30.74%), Postives = 125/231 (54.11%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQEL---LYEAQNHLMISRE--LHEKLLVAKRK--IMEHGSNQRFRQMREI-SEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQHILATKTTDDGEGSITTRRERRAVVKKSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKL 669
             E A MEF+   L PTYR+L G+PG SNA+ IA+R+GLP +++  ARE     +  ++++I +++   QE  E+       Q    + RE    E L++ K+K  I++    +  + M E+ ++A+A+   I H++  K+    I        +K  ++L+T   ++   ++        VVKK  + K    KVG+ VFV S+ + A +L++  SKE  +VQ+G +KL++
Sbjct:  460 IETASMEFNTDTLSPTYRLLVGIPGESNALTIAQRMGLPESIISKAREYISEDNKKVEKMIENIKTKSQELDEMRERFARLQEEARLDRERAKQETLIIEKQKNEIIKSAYEEAEKMMNEMRAKASALVEKIQHEEKNKEDAKQI--------QKNLNMLSTALREEKNKTV-------EVVKKIKT-KVNF-KVGDRVFVKSINQFANILKINTSKESAMVQSGILKLEV 673          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Match: MUTS2_SYNY3 (Endonuclease MutS2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.515e-19
Identity = 71/234 (30.34%), Postives = 122/234 (52.14%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKL------LVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQ---PTFERKRQHILATKTTDDGEGSITTRRERRAVVKKSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLKL 675
            FENA +EFD+ +L PTYR+LWG+PGRSNA+ IA+RLGLP  +V+ A++  G  S  I++VI  +E  ++E ++    AQ  L  +   ++++      L A+ + ++   +Q  +Q                  A+++    IR LQ   P+ ++ +Q   AT+      G I  + E++A  K +P      P VG  + + S G+ A V +V  + + + V  G MK+ + +
Sbjct:  494 FENASVEFDDQSLSPTYRLLWGIPGRSNALAIAQRLGLPLAIVEQAKDKLGGFSEDINQVIAGLESQRREQEQKAANAQKLLQETEIFYQQVSQKAASLQARERELKSYQDQEVQQAI--------------AAAKEEIAKVIRQLQRGKPSAQKAQQ---ATEIL----GQI--QAEQKA--KVAPKPIGYQPTVGERIRIPSFGQTAEVTQVNATAQTVNVTLGLMKMTVPM 702          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Match: MUTS2_LACPL (Endonuclease MutS2 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.173e-18
Identity = 72/233 (30.90%), Postives = 121/233 (51.93%), Query Frame = 1
Query:    7 NACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQHILATKTTD-----DGEGSITTRRERRAVVK-------KSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKL 669
            NA MEFDE  LKPTYR+L G+PGRSNA++IA+RLG+P  +VD AR L    S  ++ +I D+   +++ ++     +  +  S +LH +L     K   +   QR  Q+ E ++  A T   + ++++ + ++ I  L     RK+Q    T T       D +G++    ++  + K       K+  D  E    G+ V V S G++  ++R +  K E  VQ G +K+K+
Sbjct:  466 NASMEFDEETLKPTYRLLVGIPGRSNALDIAQRLGIPQAIVDQARSLTDTDSQDLNAMIADLVTKRKQVEDEQLHLKTQVADSEKLHRQL-----KSEFNAYQQRKDQLIEDAKVQANT---IVEQSKTKADAIISDL-----RKKQLASGTATVKENELIDAKGALNALEQQPKLKKNRVLRRAKAQHDFHE----GDDVLVKSYGQRGVLMR-QMGKHEWEVQLGILKMKI 680          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Match: MUTS2_BREBN (Endonuclease MutS2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.639e-18
Identity = 73/226 (32.30%), Postives = 115/226 (50.88%), Query Frame = 1
Query:    7 NACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPT----FERKRQHILATKTTDDGEGSITTRRERRAVVKKSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLK 672
            NA +EFD   L+PTYR+L GVPGRSNA  IA RLGLP +++D AR         ++ +I  +ER ++  +     A+     + EL  +L   + +  E   N+R  +  + +  A        + A+++ E+ IR L+       E K   ++  K      G+     E+  V K + + +    KVG+ V V+S G+K TVL  + + EE LVQ G MK+K+K
Sbjct:  464 NASVEFDVQTLRPTYRLLIGVPGRSNAFAIARRLGLPEHIIDVARGSISEEDNQVESMIASLERNRKSAEADRLAAKAARQEAEELRTQLEEERAQFAEE-KNKRMERAEDEARIAV-------QLAKEEAETIIRELREMMAEGMEIKEHRLIDAKKR---LGNAVLELEKEKVKKPAKAVRATQIKVGDEVMVTSFGQKGTVLE-KVNNEEFLVQIGIMKMKVK 677          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Match: MUTS2_LACP3 (Endonuclease MutS2 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.710e-17
Identity = 47/138 (34.06%), Postives = 82/138 (59.42%), Query Frame = 1
Query:    7 NACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSL 420
            NA MEFD   L+PTYR+L GVPGRSNA +I+ RLGLPG +V+ A+ +  + S  ++ +I D+E+ ++  +     A+  L  ++ +H++L  A +K     + +R  Q+++  + A    + L  KA+ + +  I+ L
Sbjct:  463 NASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLGLPGVIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYKKF----TTERDAQLQQAKDKA----NTLVDKAQTKADKIIKQL 592          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOTH (Endonuclease MutS2 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.439e-17
Identity = 69/234 (29.49%), Postives = 121/234 (51.71%), Query Frame = 1
Query:    4 ENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSL----QPTFERKRQ------HILATKTTDDGEGSITTRRERRAVVKKSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLKL 675
            ENAC EF+   L+PTYR+L GVPG+SNA  I++RLGL  ++++ A+E         +++++ +E+   + +    +A+++ + + +L ++L   KRK+ E+       + R I EA A  R IL  +ARK+ E  I  +    Q     +RQ       +   +  D  E ++      +  + K P    E  K G+ V + +L +K TV+       E++VQAG MK+ + +
Sbjct:  464 ENACCEFNVETLRPTYRLLIGVPGKSNAFAISKRLGLFDDIIEKAKEFLTQDDIKFEDMLMSIEKNLNQSENEKMKAESYRLEAEKLKKELEEQKRKLAEN-------RERLIQEARAEARKILL-EARKEAEEIISKMRRLEQEVHNAQRQKEAEELRLKLKRKVDSIEETLELPLAPKNALVKPP----ENLKPGDSVLIVNLDQKGTVITPPDKDGEVVVQAGIMKINVHI 685          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Match: MUTS2_HALOH (Endonuclease MutS2 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.479e-17
Identity = 70/235 (29.79%), Postives = 116/235 (49.36%), Query Frame = 1
Query:    4 ENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGS---NQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQHI--------LATKTTDDGEGSITTRRERRAVVKKSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLKL 675
            ENA +EFD   L+PTYR+L G+PG SNA  IA +LGLP +++ + +EL       ++ +I D+   +++Y++L            E+ E+L   K+K  ++ S   +   R+ + I+EA      I+ KK RK+ +  +R L+      R  I        L  K T   E  I+ +R+      K    + +    G+ V +   G+K  V+ V+  K E ++QAG MK+   L
Sbjct:  468 ENASVEFDMETLQPTYRLLMGIPGGSNAFEIALKLGLPHDIIKDGKELMSGDDIKVENIISDLNEERKKYEQL----------KIEIEERLEAVKKKEQKYDSLLTDLEKRKKKLITEAREEALQII-KKTRKESKEILRRLKNKEFASRSDIDRVENEINLNLKET---EKEISEKRQ-----NKDGRTRVKEISCGDQVRLKKTGQKGEVISVDREKGEAVIQAGIMKVTTGL 683          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Match: MUTS2_OCEIH (Endonuclease MutS2 OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.542e-16
Identity = 71/228 (31.14%), Postives = 121/228 (53.07%), Query Frame = 1
Query:    7 NACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMRE-ISEAAAMTRSILHKKARKQRESAIRSLQPTFE----RKRQHILATKTTDDGEGSITTRRERRAVVKKSPSDKFELPKVGNMVFVSSLGKKATVL-RVEPSKEEILVQAGNMKLKLK 672
            NA +EF+   LKPTYR+L GVPGRSNA +I+ RLGL    ++ A+ L G  S  ++ +I  +E+   E ++   +A + L+ S +L        R  +EH  N  F Q +E + + A        +KAR++ E+ +  ++   +    ++ + I A K  D+ + ++T    ++ V  K   D+   P  G+ + + ++ +   VL RV  S +E LVQ G MK+K+K
Sbjct:  461 NASVEFNVETLKPTYRLLIGVPGRSNAFDISTRLGLERATIERAKSLIGVDSKSVENMIASLEKSHLEAEQDYEQAHDVLLESEKL--------RNALEHEWN-LFEQKKEKLYKKAEEKAEKAIQKAREEAETIVSEMRQMKDSAGLKEHEWIEARKMLDEAKPNLTKNGNQKQVDPKPVEDRQLQP--GDEIKLLTVNQMGEVLERV--SDKEYLVQVGIMKVKVK 675          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Match: MUTS2_THERP (Endonuclease MutS2 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.406e-16
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMER 198
             ENA +EFD V L PTYR+L G+PGRS+A+ +A RLGLP +V+  AREL G+ +  +D +I +M+R
Sbjct:  472 LENASVEFDPVTLSPTYRLLVGLPGRSHALEVARRLGLPEDVIARARELLGSGAPQLDRLIAEMQR 537          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Match: M5XS10_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001618mg PE=4 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 7.182e-109
Identity = 171/228 (75.00%), Postives = 191/228 (83.77%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQHILAT---KTTDDGEGSITTRRERRAVVKKSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLKL 675
            FENACMEFD+V LKPTYRILWGVPGRSNAINIAERLGLPG VVDNARELYGAASAGIDEVI+DMERLKQ +Q+LLYE Q+HLM+SRE +EKLLVAKRK MEH ++QR R+MREISEAAAM RSILHKK R+ R S ++ LQP    K QH L T   +TTDD       + ERR+    S S+KFELPKVGN+VFVSSLGKKATVL+VEPSKEEI+VQAGNMKLKLKL
Sbjct:  564 FENACMEFDDVKLKPTYRILWGVPGRSNAINIAERLGLPGKVVDNARELYGAASAGIDEVIIDMERLKQGFQKLLYEGQHHLMLSRESYEKLLVAKRKTMEHSNDQRLRKMREISEAAAMARSILHKKVRQHRASLVQPLQPALTHKSQHKLETNSQRTTDDKH-----QMERRSASFLSSSEKFELPKVGNVVFVSSLGKKATVLKVEPSKEEIVVQAGNMKLKLKL 786          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Match: B9I2A9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s00450g PE=4 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 2.217e-91
Identity = 149/228 (65.35%), Postives = 184/228 (80.70%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQHILATKTTDDGEGSITTRRERRAVVK--KSPSDKF-ELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLKL 675
            FENACMEFDEVNLKPTY+ILWGVPGRSNAINI+E+LGLP  VV NAREL+GAASA I+EVI+DMER KQ+ QELL+EA++HLM+S+ LHEKL +A+RKI EHG+ QR+R+MR+ISEAA+M RSILHKK R+ R  A ++ QPT ++K+     ++ T + +    T     +VV+  K PS    ELP+VG+MV VSSLG+KATVLRV+ SKEEILVQAGNMKLKLKL
Sbjct:  429 FENACMEFDEVNLKPTYKILWGVPGRSNAINISEKLGLPSVVVSNARELHGAASAEINEVIIDMERFKQDSQELLHEARHHLMLSKNLHEKLKLARRKIKEHGTEQRYRKMRQISEAASMARSILHKKVRQLRAHATQTFQPTADQKQLSTSDSRFTAEAKNGRPTESMSTSVVEINKQPSAAMTELPEVGDMVQVSSLGRKATVLRVDRSKEEILVQAGNMKLKLKL 656          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Match: A0A067LMH3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14917 PE=4 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.864e-89
Identity = 149/234 (63.68%), Postives = 184/234 (78.63%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQHI-LATKTTDD--------GEGSITTRRERRAVVKKSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLKL 675
            FENACMEFDEVNLKPTY+ILWGVPGRSNAINI+E+LGLPG V+ NARELYG ASA I+EVI+DMER KQ++QELL+EAQ+HLM+SR LHEKLL +++KIMEHGS+QRFR+M+EISEAAAM RSILH+KAR+ R    +  QP    KRQH+ +   TT+D        G  S    R+    V+++     +LP+VG+ V V SLG+KATVL+V+ SKEEI+VQAG+MKLKLKL
Sbjct:  604 FENACMEFDEVNLKPTYKILWGVPGRSNAINISEKLGLPGIVISNARELYGTASAEINEVIIDMERFKQDFQELLHEAQHHLMLSRNLHEKLLQSRKKIMEHGSSQRFRKMQEISEAAAMARSILHRKARQLRARLTKPSQPPTASKRQHLAIDQHTTEDKNEHTAASGHSSAVEIRKHSLSVRRT-----KLPQVGDTVQVLSLGRKATVLKVDKSKEEIVVQAGSMKLKLKL 832          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Match: F6H7A2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00680 PE=4 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 6.752e-89
Identity = 148/230 (64.35%), Postives = 180/230 (78.26%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQHILATK----TTDDGEGSITTRRERRA-VVKKSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLKL 675
            FENACMEFDEVNLKPTY+ILWG+PGRSNAINIAERLG+P  V+D ARE YGAASA I+EVI+DMER KQE+QE + +A+ +LM+SR+L+E LLV KRK+MEHG+NQR+ +MRE+SEAAA+ RS+LHKK R+ R SA R  QPT   K QH  AT       D  E   T+  +  A V ++S S+K  +PKVG+MV VSSLGKKATVL VE SK +++VQAGNMKLKLKL
Sbjct:  584 FENACMEFDEVNLKPTYKILWGIPGRSNAINIAERLGVPKKVLDKAREQYGAASAEINEVIIDMERFKQEFQERVNDARYYLMLSRDLYENLLVTKRKLMEHGTNQRYGKMREVSEAAAVARSLLHKKVRQLRSSATRPSQPTAADKSQHASATSNQHTAADINERPTTSESKHPAKVAQQSSSEKKRVPKVGDMVHVSSLGKKATVLEVESSKGQLVVQAGNMKLKLKL 813          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Match: W9QX42_9ROSA (MutS2 protein OS=Morus notabilis GN=L484_001580 PE=4 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.891e-84
Identity = 146/231 (63.20%), Postives = 177/231 (76.62%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQ---PTFERKRQHILATKT----TDDGEGSITTRRERRAVVKKSPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLK 672
            FENACMEFDEVNLKPTY+ILWGVPGRSNAINIAERLGLP  VV+ ARELYG ASA IDE+ILDMERLKQEYQELL E+Q+HLM+SR+LHEKLLV + KIM+H + QR  +MR ISEAA+ +RSILH K R++RESAIR L       + K  H  AT +    +D+   + +         K+SPS K++ PKVG+MV+++SL KK TVLRV+  K E+LVQAG+MKLKLK
Sbjct:  569 FENACMEFDEVNLKPTYKILWGVPGRSNAINIAERLGLPSIVVEKARELYGVASAEIDEIILDMERLKQEYQELLEESQHHLMLSRDLHEKLLVVRTKIMKHAAEQRSWKMRVISEAASRSRSILHWKVRERRESAIRPLNLQTAKADHKSNHETATSSQNTPSDESPKAYSNSPSVAEDAKQSPSGKYKPPKVGDMVYITSLRKKGTVLRVDQFK-ELLVQAGSMKLKLK 798          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Match: A0A151U0B9_CAJCA (MutS2 protein OS=Cajanus cajan GN=KK1_005370 PE=4 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 3.625e-82
Identity = 146/239 (61.09%), Postives = 178/239 (74.48%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARK----QRESAIRSLQPTFERKRQHILATKTTDDGEGSITTRR-ERRAVVKKSPS---------DKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLKL 675
            FENACMEFDEVNLKPTY+ILWGVPGRSNAINIAERLGLP +VVDNAR+LYG+ASA IDEVI DMERLKQ+YQELL EA+++LM SREL+  LL  +RKIMEH +N RF++MR++SEAAAM RSILHKK R+     ++++  + +P+          T   D+ E +IT +    R V  +S S          K E PKVG+MV VSSLG+K TVL+V+ SK EI+VQAGNMKLKLKL
Sbjct:  542 FENACMEFDEVNLKPTYKILWGVPGRSNAINIAERLGLPSDVVDNARKLYGSASAEIDEVITDMERLKQDYQELLDEARHYLMHSRELYNSLLNTRRKIMEHSTNLRFKKMRDVSEAAAMARSILHKKVRELDVSTKQTSQNNKEPSRSSDSSATSQT-AADNKEPTITDKSASARKVFNQSRSVVIHLIEVAGKSEPPKVGDMVHVSSLGRKVTVLKVDSSKGEIVVQAGNMKLKLKL 779          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Match: A0A1Q3DAG4_CEPFO (MutS_V domain-containing protein OS=Cephalotus follicularis GN=CFOL_v3_32856 PE=4 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 9.339e-82
Identity = 141/226 (62.39%), Postives = 171/226 (75.66%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQHILATKTTDDGEGSITTRRERRAVVKKSPSDK-FELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLKL 675
            FENACMEFDEVN +PTY+ILWG+PGRSNAINIAE LGLP  VVDNARELYGAA A I++VI++MERLKQ +QELLY A+++L +S++LHE LL  + KIM HG  QR+R+MR ISEAA  +RS L  K R+ R  A +  QP+   K Q+ILA+    D     + +     V+K+ PS K  +LPK G+MV VSSLGKKATVLRVE SKEEI+VQAGNMKLKLKL
Sbjct:  621 FENACMEFDEVNFRPTYKILWGIPGRSNAINIAELLGLPSTVVDNARELYGAAGADINKVIIEMERLKQIFQELLYGARHYLRLSKDLHENLLHTRSKIMVHGREQRYRKMRLISEAAEFSRSFLQNKVRQLRAYATQPSQPSRADKCQYILASN-NQDAAAVDSKKLSSLEVIKQVPSVKRTKLPKTGDMVHVSSLGKKATVLRVELSKEEIVVQAGNMKLKLKL 845          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Match: A0A1J7H7S6_LUPAN (Uncharacterized protein OS=Lupinus angustifolius GN=TanjilG_12828 PE=4 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 5.954e-81
Identity = 142/232 (61.21%), Postives = 172/232 (74.14%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQHILATK---TTDDGEGSITTRRERRAVVKK----SPSDKFELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLKL 675
            FENACMEFD+VNLKPTY+ILWGVPGRSNAINIAERLGL   VVD AR+LYG+ASA IDEVI DME+LKQ+YQELL E  +HLM+SREL+  LL  +RKIM+H SN R+++MR++SEAAAM RSILHKK R+   S  +  QP    K     AT    T  D +   T      + VKK    SP D+ +LPKVG+MV V+SLG+KA VL+V+ SK EI+VQAG+MKLKLK+
Sbjct:  566 FENACMEFDDVNLKPTYKILWGVPGRSNAINIAERLGLTSVVVDGARKLYGSASAEIDEVITDMEKLKQDYQELLDEGHHHLMLSRELYNSLLSTRRKIMKHSSNLRYKKMRDVSEAAAMARSILHKKVRQLDASPKKPSQPNKTIKSSQSSATNNRHTAADSKEPTTIADGSASAVKKVNQLSP-DRSKLPKVGDMVNVTSLGRKAAVLKVDSSKGEIVVQAGSMKLKLKV 796          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Match: A0A1U8LPL1_GOSHI (endonuclease MutS2-like isoform X2 OS=Gossypium hirsutum GN=LOC107929573 PE=4 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.815e-80
Identity = 137/229 (59.83%), Postives = 179/229 (78.17%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQ----HILATKTTDDGEGSITTRRERRAVVKKSPSDKF-ELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLK 672
            FENACMEFDE N KPTY+ILWGVPGRSNAINIAERLG+P  +VDNARELYGAASA IDEVI+DME  KQ++QEL+ E +++L +SR+LHEKLLV++RK+ + G+ QR+++MRE+SEAAA+ RS LHKK R+ R S ++  Q +   KR+    +  AT   ++ +G+  +    + V+K+  S+K  ELPKVG+ V VSSLGK+ATVL+V+ SKEEI+VQAG MKLKLK
Sbjct:  589 FENACMEFDEENFKPTYKILWGVPGRSNAINIAERLGVPSTIVDNARELYGAASAEIDEVIMDMETYKQKFQELIKECRHYLTMSRDLHEKLLVSRRKLQDLGAQQRYKKMRELSEAAAVARSTLHKKVRQLRTSTMKQSQLSKASKRKLANNYKHATAVENEPQGTNMSSSSIQ-VIKQPQSEKITELPKVGDTVHVSSLGKRATVLKVDTSKEEIVVQAGIMKLKLK 816          
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Match: A0A1U8LTH5_GOSHI (endonuclease MutS2-like isoform X1 OS=Gossypium hirsutum GN=LOC107929573 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.645e-80
Identity = 137/229 (59.83%), Postives = 179/229 (78.17%), Query Frame = 1
Query:    1 FENACMEFDEVNLKPTYRILWGVPGRSNAINIAERLGLPGNVVDNARELYGAASAGIDEVILDMERLKQEYQELLYEAQNHLMISRELHEKLLVAKRKIMEHGSNQRFRQMREISEAAAMTRSILHKKARKQRESAIRSLQPTFERKRQ----HILATKTTDDGEGSITTRRERRAVVKKSPSDKF-ELPKVGNMVFVSSLGKKATVLRVEPSKEEILVQAGNMKLKLK 672
            FENACMEFDE N KPTY+ILWGVPGRSNAINIAERLG+P  +VDNARELYGAASA IDEVI+DME  KQ++QEL+ E +++L +SR+LHEKLLV++RK+ + G+ QR+++MRE+SEAAA+ RS LHKK R+ R S ++  Q +   KR+    +  AT   ++ +G+  +    + V+K+  S+K  ELPKVG+ V VSSLGK+ATVL+V+ SKEEI+VQAG MKLKLK
Sbjct:  598 FENACMEFDEENFKPTYKILWGVPGRSNAINIAERLGVPSTIVDNARELYGAASAEIDEVIMDMETYKQKFQELIKECRHYLTMSRDLHEKLLVSRRKLQDLGAQQRYKKMRELSEAAAVARSTLHKKVRQLRTSTMKQSQLSKASKRKLANNYKHATAVENEPQGTNMSSSSIQ-VIKQPQSEKITELPKVGDTVHVSSLGKRATVLKVDTSKEEIVVQAGIMKLKLK 825          
The following BLAST results are available for this feature:
BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy Swiss-Prot
Analysis Date: 2017-05-19 (Homology Analysis for Rubus GDR RefTrans V2 vs SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MUTS2_LACSS4.468e-2032.31Endonuclease MutS2 OS=Lactobacillus sakei subsp. s... [more]
MUTS2_FUSNN5.217e-2030.74Endonuclease MutS2 OS=Fusobacterium nucleatum subs... [more]
MUTS2_SYNY31.515e-1930.34Endonuclease MutS2 OS=Synechocystis sp. (strain PC... [more]
MUTS2_LACPL1.173e-1830.90Endonuclease MutS2 OS=Lactobacillus plantarum (str... [more]
MUTS2_BREBN5.639e-1832.30Endonuclease MutS2 OS=Brevibacillus brevis (strain... [more]
MUTS2_LACP34.710e-1734.06Endonuclease MutS2 OS=Lactobacillus paracasei (str... [more]
MUTS2_CLOTH5.439e-1729.49Endonuclease MutS2 OS=Clostridium thermocellum (st... [more]
MUTS2_HALOH8.479e-1729.79Endonuclease MutS2 OS=Halothermothrix orenii (stra... [more]
MUTS2_OCEIH5.542e-1631.14Endonuclease MutS2 OS=Oceanobacillus iheyensis (st... [more]
MUTS2_THERP6.406e-1653.03Endonuclease MutS2 OS=Thermomicrobium roseum (stra... [more]
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BLAST of rubus_GDR_reftransV2_0000564 vs. ExPASy TrEMBL
Analysis Date: 2017-05-22 (Homology Analysis for Rubus GDR RefTrans V2 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5XS10_PRUPE7.182e-10975.00Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9I2A9_POPTR2.217e-9165.35Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A067LMH3_JATCU1.864e-8963.68Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
F6H7A2_VITVI6.752e-8964.35Putative uncharacterized protein OS=Vitis vinifera... [more]
W9QX42_9ROSA1.891e-8463.20MutS2 protein OS=Morus notabilis GN=L484_001580 PE... [more]
A0A151U0B9_CAJCA3.625e-8261.09MutS2 protein OS=Cajanus cajan GN=KK1_005370 PE=4 ... [more]
A0A1Q3DAG4_CEPFO9.339e-8262.39MutS_V domain-containing protein OS=Cephalotus fol... [more]
A0A1J7H7S6_LUPAN5.954e-8161.21Uncharacterized protein OS=Lupinus angustifolius G... [more]
A0A1U8LPL1_GOSHI2.815e-8059.83endonuclease MutS2-like isoform X2 OS=Gossypium hi... [more]
A0A1U8LTH5_GOSHI4.645e-8059.83endonuclease MutS2-like isoform X1 OS=Gossypium hi... [more]

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Sequences
The following sequences are available for this feature:

contig sequence

>rubus_GDR_reftransV2_0000564 ID=rubus_GDR_reftransV2_0000564; Name=rubus_GDR_reftransV2_0000564; organism=Rubus all species; type=contig; length=677bp
TTTGAAAATGCATGTATGGAGTTTGATGAAGTGAACTTAAAGCCAACTTA
CAGAATTCTCTGGGGAGTACCAGGGCGTTCAAATGCAATCAATATAGCTG
AAAGGTTGGGACTACCTGGTAATGTAGTAGATAATGCCCGAGAACTATAT
GGTGCAGCTAGTGCAGGGATAGATGAGGTTATACTAGATATGGAACGGTT
AAAGCAAGAGTATCAAGAGCTTTTATACGAAGCACAGAATCATCTGATGA
TCTCAAGAGAGTTGCATGAGAAACTGTTGGTTGCCAAAAGGAAGATTATG
GAACATGGTAGTAATCAAAGATTTAGGCAAATGCGAGAAATATCTGAGGC
CGCTGCAATGACACGATCTATTCTTCACAAGAAAGCACGAAAACAACGTG
AATCTGCAATTCGATCTCTGCAGCCTACTTTCGAGCGTAAAAGACAGCAT
ATATTGGCAACAAAAACAACTGATGATGGTGAAGGTTCAATCACAACAAG
GAGGGAAAGGAGGGCTGTTGTTAAAAAATCACCATCAGATAAGTTTGAGC
TTCCCAAGGTTGGCAATATGGTGTTTGTTTCTTCCCTTGGAAAGAAGGCG
ACAGTTTTGAGAGTGGAACCATCTAAAGAAGAAATATTGGTTCAAGCTGG
AAACATGAAGTTGAAATTGAAACTAGG
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