GWAS0000902 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0000902 [ MapViewer ]
Published Symbol	SSC_2011
Trait Name	total water soluble content
Trait Alias	N/A
GWAS Marker	SNP_IGA_58626
GWAS Study	Peach-fruit_quality-GWAS-Linge-2021
Genome Assembly	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Statistical Mothod	mrMLM
Experimental Model	N/A
GWAS Panel	Fresh_Market_Peach_AR_SC_TX_620
LOD	24.09
P Value	6.0981766399878E-26
R2	9.7
Unique key	3510-SSC_2011SNP_IGA_5862625.2148mrMLM
Effect	2.2411
MAF	0.1448
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000192283	total water soluble content

Genome Location


Name	Type	Location	Analysis	MapViewer
scaffold_1	supercontig	scaffold_1:16564555..16564555	Prunus persica Whole Genome v1.0 Assembly & Annotation	View
Pp01	chromosome	Pp01:17538855..17538855	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	View

Publications


Year	Publication
2021	da Silva Linge Cassia, Cai Lichun, Fu Wanfang, Clark John, Worthington Margaret, Rawandoozi Zena, Byrne David H., Gasic Ksenija. Multi-Locus Genome-Wide Association Studies Reveal Fruit Quality Hotspots in Peach Genome. Frontiers in Plant Science 25 February 2021; https://doi.org/10.3389/fpls.2021.644799

Germplasm


Stock Name	Type
Fresh_Market_Peach_AR_SC_TX_620	panel