BPPCT036 (genetic_marker) Prunus persica | GDR

Marker Overview

Marker Overview


Name	BPPCT036
Genbank ID	N/A
Type	SSR
Species	Prunus persica
Germplasm	OHenry
Source Type	Genomic DNA
Repeat Motif	(AG)11
PCR Condition	94 C 1 min, 94 C 45 sec, 57 C 45 sec, 72 C 2 min. 35 cycles, 72 C 4min
Primer 1	BPPCT036.F primer: AAGCAAAGTCCATAAAAACGC
Primer 2	BPPCT036.Forward primer: AAGCAAAGTCCATAAAAACGC
Primer 3	BPPCT036.R primer: GGACGAAGACGCTCCATT
Primer 4	BPPCT036.Reverse primer: GGACGAAGACGCTCCATT
Product Length	253
Polymorphism	P_ BPPCT036
Publication	[view all]
Contact	E. Dirlewanger

Contact

Name

Details

E. Dirlewanger

First name:	Elisabeth
Last name:	Dirlewanger
Institution:	INRA
Address:	Unite de Recherche sur les Especes Fruitieres et la Vigne, Centre de Bordeaux, BP 81, 33883 Villenave d Ornon cedex, France
Country:	France
Email:	dirlewan@bordeaux.inra.fr

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Pp01	chromosome	Pp01:37719130..37719381 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	GDR marker alignment to genome using primer sequences
PAV01_REGINA	chromosome	PAV01_REGINA:43736353..43736599 .	Prunus avium Regina Genome v1.0 Assembly & Annotation	GDR marker alignment to genome using primer sequences
chr_1	chromosome	chr_1:47931991..47932237 .	Prunus avium Tieton Genome v2.0 Assembly & Annotation	GDR marker alignment to genome using primer sequences

Publications


Year	Publication
2002	Dirlewanger E, Cosson P, Tavaud M, Aranzana J, Poizat C, Zanetto A, Arús P, Laigret F. Development of microsatellite markers in peach [ Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry ( Prunus avium L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2002 Jul; 105(1):127-138.

Germplasm


Stock Name	Type
OHenry	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Prunus Bin Map	LG4	N/A	49.9	BPPCT036	View
2	Prunus-TE-F2	G4	N/A	49.9	BPPCT036	View
3	Peach-DG-F1-2009	G1	N/A	106.3	BPPCT036	View
4	Peach-CF-F2-2014	1	N/A	73.96	BPPCT036B	View
5	Peach-CF-F2	G1	N/A	71	BPPCT036B	View
6	Chokecherry-RCxSC-F1-2014	RC XVb	N/A	20.3	BPPCT036-3	View
7	Chokecherry-RCxSC-F1-2017	Cho-15	N/A	96.13	BPPCT036-3	View
8	Chokecherry-RCxSC-F1-2014	SC III	N/A	25.1	BPPCT036-1	View
9	Chokecherry-RCxSC-F1-2017	Cho-3	N/A	149.18	BPPCT036-1	View