BPPCT040, BPPCT040 (genetic_marker) Prunus persica

Marker Overview
NameBPPCT040
Genbank IDAF374946
TypeSSR
SpeciesPrunus persica
GermplasmOHenry
Source TypeGenomic DNA
genomic
Repeat Motif(GA)14
PCR Condition94 C 1 min, 94 C 45 sec, 57 C 45 sec, 72 C 2 min. 35 cycles, 72 C 4min
Primer 1BPPCT040.F primer: ATGAGGACGTGTCTGAATGG
Primer 2BPPCT040.Forward primer: ATGAGGACGTGTCTGAATGG
Primer 3BPPCT040.R primer: AGCCAAACCCCTCTTATACG
Primer 4BPPCT040.Reverse primer: AGCCAAACCCCTCTTATACG
Product Length135
Publication[view all]
ContactE. Dirlewanger
Amy Iezzoni
Contact
NameDetails
E. Dirlewanger
First name:Elisabeth
Last name:Dirlewanger
Institution:INRA
Address:Unite de Recherche sur les Especes Fruitieres et la Vigne, Centre de Bordeaux, BP 81, 33883 Villenave d Ornon cedex, France
Country:France
Email:dirlewan@bordeaux.inra.fr
Amy Iezzoni
First name:Amy
Last name:Iezzoni
Title:Professor
Institution:Michigan State University
Address:A342 PSSB, East Lansing, MI 48824
Country:USA
Email:iezzoni@msu.edu
Phone:517-355-5191 x1391
Keywords:cherry breeder
Last update:Jun 2017
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
GDR Markers Database2004-01-01
Alignment of genetic markers to Prunus persics v2.02019-04-11
Germplasm
Stock NameType
OHenryaccession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Almond-NL-F1-2010G4N/A32.78BPPCT040View
2Peach-AJ-F2-2005G4N/A22.7BPPCT040View
3Prunus-TE-F2G4N/A18.4BPPCT040View
4Peach-AJ-F2G4N/A22.7BPPCT040View
5Sweet Cherry-EFxNY-F1-2008EF4N/A36.27BPPCT040View
6Prunus Bin MapLG4N/A18.4BPPCT040View
7Flowering Cherry-CYxE750-F1-CY4N/A20.2BPPCT040View
8Peach-PIxSL-F2LG4N/A219BPPCT040View
9Prunus-TxE-peachV2.0LG4N/A18.4BPPCT040View
10Sweet Cherry-C-303xBenikirari-F1Pa4N/A22.29BPPCT040View
11Sweet Cherry-C-309xC-195-50-F1Pa4N/A31.68BPPCT040View
12Sweet Cherry-C-309xBenikirari-F1Pa4N/A47.8BPPCT040View
13Sweet Cherry-PAV_r1.0_consensus_map-F1Pa4N/A58.05BPPCT040View
14Sweet Cherry-PAxPN-94G4N/A36.7BPPCT040View
15Sweet Cherry-47G4N/A36.9BPPCT040View
16Chokecherry-RCxSC-F1-2014RC XIIaN/A16.3BPPCT040-5View
17Chokecherry-RCxSC-F1-2017Cho-4N/A111.37BPPCT040-5View
18Chokecherry-RCxSC-F1-2014RC XIIaN/A17.3BPPCT040-4View
19Chokecherry-RCxSC-F1-2017Cho-4N/A109.88BPPCT040-4View
20Chokecherry-RCxSC-F1-2014RC XIIaN/A17.7BPPCT040-6View
21Chokecherry-RCxSC-F1-2017Cho-4N/A112.92BPPCT040-6View
22Chokecherry-RCxSC-F1-2014RC XIIaN/A20.2BPPCT040-3View
23Chokecherry-RCxSC-F1-2017Cho-4N/A118.89BPPCT040-3View
24Chokecherry-RCxSC-F1-2014RC XIIaN/A29.5BPPCT040-1View
25Chokecherry-RCxSC-F1-2017Cho-4N/A122.07BPPCT040-1View
26Chokecherry-RCxSC-F1-2014RC XIVbN/A63BPPCT040-7View
27Chokecherry-RCxSC-F1-2017Cho-12N/A31.55BPPCT040-7View
28Chokecherry-RCxSC-F1-2017Cho-4N/A114.21BPPCT040-2View
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:6460443..6460959. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:6460412..6460928+ Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)