PacC13 (genetic_marker) Prunus armeniaca | GDR

Marker Overview

Marker Overview


Name	PacC13
Genbank ID	N/A
Type	SSR
Species	Prunus armeniaca
Germplasm	Stark Early Orange
Source Type	cDNA
Repeat Motif	(GA)10
PCR Condition	2 mM of MgCl2, 0.1 mM of each dNTP, 0.2 mcM of each primer, 1? Buffer and 0.5 units of Taq polymerase (Sigma)in 25 mcl final volume. Thermocycling conditions were 30 s at 94 C, followed by 30 cycles of (94 ?C for 30 s, 57.5 C for 30 s and 72 C for 30 s) and an extension step at 72 C for 7 min.
Primer 1	PacC13.forward primer: GCTTGCTGCTCATCATTTAC
Primer 2	PacC13.reverse primer: AATAACAACCATATTGGAGTATTTAC
Product Length	110
Polymorphism	P_ PacC13
Publication	[view all]

Publications


Year	Publication
2003	Decroocq V, Favé MG, Hagen L, Bordenave L, Decroocq S. Development and transferability of apricot and grape EST microsatellite markers across taxa. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2003 Mar; 106(5):912-22.

Germplasm


Stock Name	Type
Stark Early Orange	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Peach-CF-F2-2014	8	N/A	54.09	PacC13	View
2	Peach-HU-F2	G8	N/A	54.2	PacC13	View
3	Peach-CF-F2	G8	N/A	51	PacC13	View
4	Chokecherry-RCxSC-F1-2014	RC XIII	N/A	57.7	PacC13-3	View
5	Chokecherry-RCxSC-F1-2014	RC XIII	N/A	167.5	PacC13-1	View
6	Chokecherry-RCxSC-F1-2017	Cho-13	N/A	160.74	PacC13-1	View
7	Chokecherry-RCxSC-F1-2014	SC XIII	N/A	5.2	PacC13-2	View
8	Chokecherry-RCxSC-F1-2017	Cho-13	N/A	0	PacC13-2	View

Alignments

Feature Name	Type	Location	Analysis
PAV08_REGINA	chromosome	PAV08_REGINA:21554007..21554118.	Prunus avium Regina Genome v1.0 Assembly & Annotation
chr_8	chromosome	chr_8:31856407..31856518.	Prunus avium Tieton Genome v2.0 Assembly & Annotation
Pp08	chromosome	Pp08:18135154..18135253.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Pd08	chromosome	Pd08:14805668..14805767.	Prunus dulcis Lauranne Genome v1.0