SNP_IGA_393684, SNP_IGA_393684 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_393684
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_393684
IRSC 16K SNP array for peach:SNP_IGA_393684
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_393684_LEFT_primer_0: GGATCCTCGTAGGTCAGCATAG
Primer 2SNP_IGA_393684_RIGHT_primer_0: GCAGTCATGGTCCAAATGTTTA
Product Length295
Publication[view all]
ContactPere Arus
Ksenija Gasic
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1peach-ZC-F24_1N/A24.71SNP_IGA_393684View
2Peach-VV-F2G4N/A15.1SNP_IGA_393684View
3Prunus-TE-F2-20154N/A11.2SA393684View
4Prunus-TE-BC1-T1EG4_T1EN/A22.6SA393684View
5Peach-PF-BC1-2017LG4N/A21.8SNP_IGA_393684View
6Peach-PF-F1-2017LG4N/A25.8SNP_IGA_393684View
7Peach-ZC-F2-20184N/A18.69SNP_IGA_393684View
8Peach_Consensus_map_20184N/A22.72SNP_IGA_393684View
Sequence
>SNP_IGA_393684 ID=SNP_IGA_393684; Name=SNP_IGA_393684; organism=Prunus persica; type=genetic_marker; length=121bp
TGTGATGAAGAGCATCAAATCGATTGCTTTTCCCCTTCGTAAAACGTAGC
TATTGATAGGRTAGATGATTGGCTTAAGATGGTCGCAAATCATTTCCAAC
ACTTTCTTATCCATATGATGA
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:5764835..5764835. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:5748833..5748833. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)