RosBREED_snp_sweet_cherry_Pp3_01008652, RosBREED_snp_sweet_cherry_Pp3_01008652 (genetic_marker) Prunus avium

Marker Overview

Name

RosBREED_snp_sweet_cherry_Pp3_01008652

dbSNP ID

SNP Array ID

IRSC 6K SNP array for cherry:

RosBREED_snp_sweet_cherry_Pp3_01008652

Type

SNP

SNP Alleles

A/G

Species

Publication

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Publications


Year	Publication
2012	Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-RL-F1-2015	R8	N/A	44.07	Rsweet_3_01008652	View
2	Prunus-TE-6K cherry SNP-estimate	3	N/A	4.12	RosBREED_snp_sweet_cherry_Pp3_01008652	View
3	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	3	N/A	6.24	RosBREED_snp_sweet_cherry_Pp3_01008652	View
4	Sweet Cherry-C-F1	LG8	N/A	59.2	RosBREED_snp_sweet_cherry_Pp3_01008652	View
5	Sweet Cherry-VxC-F1	LG8	N/A	58.3	RosBREED_snp_sweet_cherry_Pp3_01008652	View
6	Sweet Cherry-CxC-F2	LG8	N/A	53.39	RosBREED_snp_sweet_cherry_Pp3_01008652	View
7	Sweet Cherry-BCxBC-F2	LG8	N/A	45.37	RosBREED_snp_sweet_cherry_Pp3_01008652	View
8	Sweet Cherry-RL-F1-2014	R8	N/A	42.8	RosBREED_snp_sweet_cherry_Pp3_01008652	View
9	Sweet Cherry-S-F1	8	N/A	47.18	RosBREED_snp_sweet_cherry_Pp3_01008652	View
10	Sweet Cherry-AxS-F1	8	N/A	51.52	RosBREED_snp_sweet_cherry_Pp3_01008652	View
11	Sweet Cherry-RL-Regina-2023	R8	N/A	49.4	RosBREED_snp_sweet_cherry_Pp3_01008652	View
12	Sweet Cherry-RL-Regina-2013	LG08	N/A	43.8	ss490550875	View
13	Sweet Cherry-RL-F1-2013	LG08	N/A	58	ss490550875	View

Alignments

Feature Name	Type	Location	Analysis
scaffold_3	supercontig	scaffold_3:1008652..1008652.	Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp03	chromosome	Pp03:1870601..1870601.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3	chromosome	PAV_r1.0chr3:1008029..1008029.	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)