RosBREED_snp_sweet_cherry_Pp1_05894052, RosBREED_snp_sweet_cherry_Pp1_05894052 (genetic_marker) Prunus avium

Marker Overview

Name

RosBREED_snp_sweet_cherry_Pp1_05894052

dbSNP ID

SNP Array ID

IRSC 6K SNP array for cherry:

RosBREED_snp_sweet_cherry_Pp1_05894052

Type

SNP

SNP Alleles

A/C

Species

Publication

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Publications


Year	Publication
2012	Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-RG-F1-2015	G1	N/A	14.08	Rsweet_1_05894052	View
2	Sweet Cherry-RL-F1-2015	L1	N/A	9.45	Rsweet_1_05894052	View
3	Prunus-TE-6K cherry SNP-estimate	1	N/A	9.61	RosBREED_snp_sweet_cherry_Pp1_05894052	View
4	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	1	N/A	26.08	RosBREED_snp_sweet_cherry_Pp1_05894052	View
5	Sour Cherry-M172x25-F1	LG1	N/A	13.53	RosBREED_snp_sweet_cherry_Pp1_05894052	View
6	SourCherry-Montx25-F1	LG1	N/A	13.53	RosBREED_snp_sweet_cherry_Pp1_05894052	View
7	SourCherry-25x25-F1	LG1	N/A	13.53	RosBREED_snp_sweet_cherry_Pp1_05894052	View
8	Sour Cherry-US-F1	LG1	N/A	13.53	RosBREED_snp_sweet_cherry_Pp1_05894052	View
9	SourCherry-RE-F1	LG1	N/A	13.53	RosBREED_snp_sweet_cherry_Pp1_05894052	View
10	SweetCherry-FX-F1-Fercer	F1	N/A	26.41	RosBREED_snp_sweet_cherry_Pp1_05894052	View
11	Sweet Cherry-BTK-Black Tartarian-2013	LG01	N/A	21.9	ss490545852	View
12	Sweet Cherry-RL-Lapins-2013	LG01	N/A	11.2	ss490545852	View
13	Sweet Cherry-BTK-F1-2013	LG01	N/A	28.1	ss490545852	View
14	Sweet Cherry-RL-F1-2013	LG01	N/A	13.5	ss490545852	View

Alignments

Feature Name	Type	Location	Analysis
scaffold_1	supercontig	scaffold_1:5894052..5894052.	Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01	chromosome	Pp01:6343413..6343413.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1	chromosome	PAV_r1.0chr1:4802040..4802040.	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)