RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4, RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4
50K SNP array for apple:	AX-105203746

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

CTGGATATAAAGGCTCGTGCCTTCTCAGCAGCAGC

3' Flanking Sequence

AAGGAGAAACTTGAGGCTGCTGGCTGCAACCTCA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC008792.514	contig	MDC008792.514:18262..18262 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr16	chromosome	Chr16:2997591..2997591 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	13	N/A	9.5	RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4	View
2	Apple-M432-2013-physical-Malus-domestica	16	N/A	1181616	RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4	View

Sequence

>RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4 ID=RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4; Name=RosBREEDSNP_SNP_GA_1181616_Lg16_01588_MAF20_1632539_exon4; organism=Malus x domestica; type=genetic_marker; length=70bp
CTGGATATAAAGGCTCGTGCCTTCTCAGCAGCAGCRAAGGAGAAACTTGA
GGCTGCTGGCTGCAACCTCA