RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2, RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2
Aliasss475878161
rs267611107
b475878161
SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2
AX-105177159
dbSNP IDss475878161
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2
50K SNP array for apple:RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTGTAGACTCTTGTTGTACTCTTGTGCTCGATTATA
3' Flanking SequenceAAATCCTGATACGAAGAAACCTGCAGCGACACAA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2Malus x domesticamarker_locus
RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2-47.01Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2 ID=RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2|Name=RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2|organism=Malus x domestica|type=genetic_marker|length=70bp
TGTAGACTCTTGTTGTACTCTTGTGCTCGATTATAYAAATCCTGATACGA
AGAAACCTGCAGCGACACAA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201310N/A92.25RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2View
2Apple-M432-2013-physical-Malus-domestica5N/A2409387RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2View
3Pear-PH-CG-2017LG5N/A47.01RosBREEDSNP_SNP_CT_2409387_Lg5_02457_MAF40_1665658_exon2View
Alignments
Feature NameTypeLocationAnalysis
MDC015841.261 contig MDC015841.261:14942..14942. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr05 chromosome Chr05:45849585..45849585. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr05 chromosome Chr05:45849583..45849583. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation