RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1, RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1
Aliasss475883046
rs267615986
R_49286326_L15_PA
dbSNP IDss475883046
SNP Array ID
20K SNP array for apple:AX-105222283
IRSC 9K SNP array for apple:AX-105222283
480K SNP array for apple:AX-105222283
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1.probe: CGCCTTCTCGACAAGCCCAGGCTCAACATTGAGAGGCAGAGGTCCTTCGA
5' Flanking SequenceTGTCCATGTTGTCCAAGCCGACTCTTGTGAGGCCAATGGAGAGCTCACTGAGTGACCTCT C
3' Flanking SequenceTCGAAGGACCTCTGCCTCTCAATGTTGAGCCTGGGCTTGTCGAGAAGGCGTGAGAGGTCG T
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Libraries
Library NameType
20K SNP array for appleSNP_chip
480K SNP array for appleSNP_chip
IRSC 9K SNP array for appleSNP_chip
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1 ID=RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1|Name=RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
GTGAGGCCAATGGAGAGCTCACTGAGTGACCTCTC[A/G]TCGAAGGACC
TCTGCCTCTCAATGTTGAGCCTGGG
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20138N/A57.95RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1View
2Apple-M432-2013-physical-Malus-domestica15N/A49286326RosBREEDSNP_SNP_GA_49286326_Lg15_01707_MAF40_390435_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC023073.23 contig MDC023073.23:21211..21211. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr15 chromosome Chr15:50547456..50547456+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr15 chromosome Chr15:50547457..50547456. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218