RosBREEDSNP_SNP_CT_23845634_Lg11_10010_MAF10_MDP0000268864_exon1, RosBREEDSNP_SNP_CT_23845634_Lg11_10010_MAF10_MDP0000268864_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_23845634_Lg11_10010_MAF10_MDP0000268864_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_23845634_Lg11_10010_MAF10_MDP0000268864_exon1
50K SNP array for apple:	AX-105221665

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

GATATCGGGTGCCGGACATGGTGGAAGAGATGGCG

3' Flanking Sequence

TGGACTGAAGCAAAGCAGCATGATGGGTCTGATA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC018227.138	contig	MDC018227.138:139..139 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr04	chromosome	Chr04:19814614..19814614 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr10	chromosome	Chr10:34081148..34081148 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr11	chromosome	Chr11:21820414..21820414 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr17	chromosome	Chr17:10925680..10925680 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	3	N/A	4.6	RosBREEDSNP_SNP_CT_23845634_Lg11_10010_MAF10_MDP0000268864_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	11	N/A	23845634	RosBREEDSNP_SNP_CT_23845634_Lg11_10010_MAF10_MDP0000268864_exon1	View

Sequence

>RosBREEDSNP_SNP_CT_23845634_Lg11_10010_MAF10_MDP0000268864_exon1 ID=RosBREEDSNP_SNP_CT_23845634_Lg11_10010_MAF10_MDP0000268864_exon1; Name=RosBREEDSNP_SNP_CT_23845634_Lg11_10010_MAF10_MDP0000268864_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
GATATCGGGTGCCGGACATGGTGGAAGAGATGGCGYTGGACTGAAGCAAA
GCAGCATGATGGGTCTGATA