RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8, RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8
50K SNP array for apple:	AX-105204411

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

TACTTATAATTTGAGATTTCCTTTGGAGATAGTCT

3' Flanking Sequence

AGCGAATCAAAATTTAAGTTGTTGGTGACATTTAT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC017294.178	contig	MDC017294.178:29703..29703 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr09	chromosome	Chr09:17493626..17493626 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-Honeycrisp_Consensus-F1	9	N/A	43.09	RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8	View
2	Apple-RosBREED-3.9K-2019	9	N/A	43.09	RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8	View
3	Apple-BB-F1	9	N/A	43.66	RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8	View
4	Apple-NC-F1	9	N/A	55.94	RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8	View
5	Apple-NCZFBB-consensus	9	N/A	46.38	RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8	View
6	Apple-ZF-F1	9	N/A	57.22	RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8	View

Sequence

>RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8 ID=RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8; Name=RosBREEDSNP_SNP_AG_32880805_Lg13_02890_MAF30_1665365_exon8; organism=Malus x domestica; type=genetic_marker; length=71bp
TACTTATAATTTGAGATTTCCTTTGGAGATAGTCTYAGCGAATCAAAATT
TAAGTTGTTGGTGACATTTAT