RosBREEDSNP_SNP_CT_9290123_Lg5_01896_MAF50_139459_exon1, RosBREEDSNP_SNP_CT_9290123_Lg5_01896_MAF50_139459_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_9290123_Lg5_01896_MAF50_139459_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_9290123_Lg5_01896_MAF50_139459_exon1
50K SNP array for apple:	AX-105217384

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

CAGTAGTTTTAAACTAACATGATCTTACCCCATTT

3' Flanking Sequence

GAAAGCCAATTAAAGAAATAATGATGGACATGCA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC002600.569	contig	MDC002600.569:10031..10031 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr05	chromosome	Chr05:39529567..39529567 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2012	Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-PM-F1-Moonglow	15	N/A	43.8	RosBREED_SNP_CT_9290123_Lg5_01896_MAF50_139459_exon1	View
2	Pear-PH-CG-2017	LG15	N/A	108.78	RosBREEDSNP_SNP_CT_9290123_Lg5_01896_MAF50_139459_exon1	View

Sequence

>RosBREEDSNP_SNP_CT_9290123_Lg5_01896_MAF50_139459_exon1 ID=RosBREEDSNP_SNP_CT_9290123_Lg5_01896_MAF50_139459_exon1; Name=RosBREEDSNP_SNP_CT_9290123_Lg5_01896_MAF50_139459_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
CAGTAGTTTTAAACTAACATGATCTTACCCCATTTYGAAAGCCAATTAAA
GAAATAATGATGGACATGCA