RosBREEDSNP_SNP_GT_25749139_Lg9_250343_MAF20_250343_exon1, RosBREEDSNP_SNP_GT_25749139_Lg9_250343_MAF20_250343_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GT_25749139_Lg9_250343_MAF20_250343_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_GT_25749139_Lg9_250343_MAF20_250343_exon1
50K SNP array for apple:	AX-105174518

Type

SNP

SNP Alleles

T/G

5' Flanking Sequence

CTCCATTTCTTCGATCATTCTTCCCATGTTACAAA

3' Flanking Sequence

ATGGCCTTCTTCAGTTGACAGGTGCATATTCATC

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC019055.153	contig	MDC019055.153:20751..20751 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr05	chromosome	Chr05:5961217..5961217 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr05	chromosome	Chr05:5961215..5961215 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_GT_25749139_Lg9_250343_MAF20_250343_exon1 ID=RosBREEDSNP_SNP_GT_25749139_Lg9_250343_MAF20_250343_exon1; Name=RosBREEDSNP_SNP_GT_25749139_Lg9_250343_MAF20_250343_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
CTCCATTTCTTCGATCATTCTTCCCATGTTACAAAKATGGCCTTCTTCAG
TTGACAGGTGCATATTCATC