RosBREEDSNP_SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2, RosBREEDSNP_SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2
50K SNP array for apple:	AX-105199519

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

TCGACCAAGCTCATGTCGTAGAAATCAAGCCCGTC

3' Flanking Sequence

GTACCGTTCAGCGTGAACTCTACAAGAGTAATAG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC001956.310	contig	MDC001956.310:20747..20747 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr15	chromosome	Chr15:42569183..42569183 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr15	chromosome	Chr15:42569181..42569181 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple_HCGA_F1	15	N/A	93.17	SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2	View
2	Apple_HC64_F1	15	N/A	16.8	SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2	View
3	Apple_HCMO_F1	15	N/A	5.03	SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2	View
4	Apple_HGMM_Consenus	15	N/A	112.57	SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2	View
5	Apple-BB-F1	15	N/A	96.28	SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2	View
6	Apple-NCZFBB-consensus	15	N/A	100.41	SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2	View
7	Apple-ZF-F1	15	N/A	103.02	SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2	View

Sequence

>RosBREEDSNP_SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2 ID=RosBREEDSNP_SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2; Name=RosBREEDSNP_SNP_CT_13763604_Lg5_01505_MAF30_MDP0000233004_exon2; organism=Malus x domestica; type=genetic_marker; length=70bp
TCGACCAAGCTCATGTCGTAGAAATCAAGCCCGTCYGTACCGTTCAGCGT
GAACTCTACAAGAGTAATAG