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Marker Overview
Name | Rub_AX-566104058 |
dbSNP ID | N/A |
SNP Array ID | 13K SNP Array for Rubus: | Affx-1240499534 | Red_raspberry-KASP24: | Rub_AX-566104058 | Red_raspberry-KASP48: | Rub_AX-566104058 |
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Type | SNP |
SNP Alleles | Y |
5' Flanking Sequence | TACTTTCAAATTCCCTGTGGGTCAAAATCAAGCAT |
3' Flanking Sequence | AGTAGCAGCAACCGGTAATCCATCTGGTCCTTTGA |
Species | Rubus spp. |
Primer 1 | Rub_AX-566104058.KASP_Primer_Allele_C: GGATTACCGGTTGCTGCTACTG |
Primer 2 | Rub_AX-566104058.KASP_Primer_Allele_T: ATGGATTACCGGTTGCTGCTACTA |
Primer 3 | Rub_AX-566104058.KASP_Primer_Common: AAATTCCCTGTGGGTCAAAATCAAGCAT |
Publication | [view all] |
Contact | Sara Montanari Nahla Bassil
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Comment | SNP from Rubus occidentalis |
Libraries
Library Name | Type |
13K SNP Array for Rubus | SNP_chip |
Red_raspberry-KASP24 | SNP_chip |
Red_raspberry-KASP48 | SNP_chip |
Alignments
The following features are aligned
Feature Name | Type | Location | Analysis | Reference |
Ro02 | chromosome | Ro02:8806759..8806759 . | Rubus occidentalis Whole Genome v3.0 Assembly & Annotation | Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications.. G3 (Bethesda, Md.). 2023 Aug 11. |
Publications
Year | Publication |
2023 | Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications. G3 (Bethesda, Md.). 2023 Aug 11. DOI: 10.1093/g3journal/jkad170 |
2023 | Clare, S. J., R. M. King, M. Hardigan, M. Dossett, S. Montanari, D. Chagné, C. Ochsenfeld, C. Britton, R. Rapp and N. Bassil "Development of KASP fingerprinting panel for clonal identification in red raspberry (Rubus idaeus L.)." Plant Breeding https://doi.org/10.1111/pbr.13141 |
Sequence
>Rub_AX-566104058 ID=Rub_AX-566104058; Name=Rub_AX-566104058; organism=Rubus spp.; type=genetic_marker; length=71bp TACTTTCAAATTCCCTGTGGGTCAAAATCAAGCATYAGTAGCAGCAACCG GTAATCCATCTGGTCCTTTGA
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