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Transcript Overview
Name | PL |
Unique Name | KJ547669.1-PL.m1 |
Type | mRNA |
Organism | Pyrus x bretschneideri () |
Source | genbank |
Product | pectate lyase |
Genbank Note | forms right handed beta helix structure; involved in maceration and soft rotting of plant tissue |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Cross References
External references for this mRNA
Alignments
Feature Name | Type | Location | Analysis |
KJ547669 |
region |
KJ547669:1..1245+ |
NCBI Rosaceae gene and mRNA sequences |
scaffold01715 |
supercontig |
scaffold01715:4350..6245- |
Pyrus communis Genome v1.0 Draft Assembly & Annotation |
Sequences
The
following sequences are available for this feature:
mRNA sequence >KJ547669.1-PL.m1 ID=KJ547669.1-PL.m1; Name=PL; organism=Pyrus x bretschneideri; type=mRNA; length=1245bp atgccaaaaatggcaaggccctcctcaggcccctcacttctctctctcct cctcctctctctcctcttcccaaccctcatttcctccaggccacttcatc tccaagaccctgaattggtagtacaagaggtacaaaggaatattagcgac tcagtgtctaggaggaacttgggctacttgtcatgcgggacgggcaaccc tatcgacgactgctggcggtgcgacccgaactgggagaagaacaggcaga gcctagcagattgtgcgatagggttcggaaagaacgccataggtggaaga gacgggaagatttacgtggtcacagattccggcgacgacgaccctgtgaa ccccaagccaggaaccctacgacacgccgtcatccaagaggagccattat ggatcattttccagcgcgacatgaccatccagctgaaggaggagctgatc atgaactccttcaagacaatcgacggccggggagcgtccgtacacattgc cggtgggccatgcatcaccatccagttcgtgaccaacattattatccacg gactgcacatacacgattgcaagcagggtgggaacgctatggtgaggagc tcccccagtcacttcgggtggaggaccgtatcggacggcgacggcgtgtc gatcttcggtgggagccacgtgtgggtggaccattgctcgttgtccaact gcaaagatgggttggttgatgcgatttatgggtccactgcgataacgatt tcgaacaattacatgacgcaccatgataaggtgatgcttttggggcatag cgattcgtataccaaggacaagaacatgcaaatcaccattgcgttcaatc actttggagaaggcttggtccaaagaatgccaagatgtaggcatggatat ttccatgtggtgaacaatgactacacccattgggagatgtatgccattgg tgggagtgcagaccctacaatcaatagccaagggaacagatttgctgcac cagatatcagatccagcaaagaggtgaccaaacatgaggatgcacccgaa agtgaatggaagaattggaactggaggtcggaaggagacttgctgctcaa cggtgcgttttttacggcatcaggtgccggagcttcctcaagctacgcca gggcttcgagcttgggtgcgaagccatcttctctagtgggtgcgattacc acggcttccggcgcactcagttgccggaagggctctcgttgctga back to topprotein sequence of PL >KJ547669.1-PL.p1 ID=KJ547669.1-PL.p1; Name=PL; organism=Pyrus x bretschneideri; type=polypeptide; length=414bp MPKMARPSSGPSLLSLLLLSLLFPTLISSRPLHLQDPELVVQEVQRNISD SVSRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQSLADCAIGFGKNAIGGR DGKIYVVTDSGDDDPVNPKPGTLRHAVIQEEPLWIIFQRDMTIQLKEELI MNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGLHIHDCKQGGNAMVRS SPSHFGWRTVSDGDGVSIFGGSHVWVDHCSLSNCKDGLVDAIYGSTAITI SNNYMTHHDKVMLLGHSDSYTKDKNMQITIAFNHFGEGLVQRMPRCRHGY FHVVNNDYTHWEMYAIGGSADPTINSQGNRFAAPDIRSSKEVTKHEDAPE SEWKNWNWRSEGDLLLNGAFFTASGAGASSSYARASSLGAKPSSLVGAIT TASGALSCRKGSRC back to topmRNA from alignment at KJ547669:1..1245+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJ547669.1-PL.m1 ID=KJ547669.1-PL.m1; Name=PL; organism=Pyrus x bretschneideri; type=mRNA; length=1245bp; location=Sequence derived from: KJ547669:1..1245+ (Pyrus x bretschneideri atgccaaaaatggcaaggccctcctcaggcccctcacttctctctctcct
cctcctctctctcctcttcccaaccctcatttcctccaggccacttcatc
tccaagaccctgaattggtagtacaagaggtacaaaggaatattagcgac
tcagtgtctaggaggaacttgggctacttgtcatgcgggacgggcaaccc
tatcgacgactgctggcggtgcgacccgaactgggagaagaacaggcaga
gcctagcagattgtgcgatagggttcggaaagaacgccataggtggaaga
gacgggaagatttacgtggtcacagattccggcgacgacgaccctgtgaa
ccccaagccaggaaccctacgacacgccgtcatccaagaggagccattat
ggatcattttccagcgcgacatgaccatccagctgaaggaggagctgatc
atgaactccttcaagacaatcgacggccggggagcgtccgtacacattgc
cggtgggccatgcatcaccatccagttcgtgaccaacattattatccacg
gactgcacatacacgattgcaagcagggtgggaacgctatggtgaggagc
tcccccagtcacttcgggtggaggaccgtatcggacggcgacggcgtgtc
gatcttcggtgggagccacgtgtgggtggaccattgctcgttgtccaact
gcaaagatgggttggttgatgcgatttatgggtccactgcgataacgatt
tcgaacaattacatgacgcaccatgataaggtgatgcttttggggcatag
cgattcgtataccaaggacaagaacatgcaaatcaccattgcgttcaatc
actttggagaaggcttggtccaaagaatgccaagatgtaggcatggatat
ttccatgtggtgaacaatgactacacccattgggagatgtatgccattgg
tgggagtgcagaccctacaatcaatagccaagggaacagatttgctgcac
cagatatcagatccagcaaagaggtgaccaaacatgaggatgcacccgaa
agtgaatggaagaattggaactggaggtcggaaggagacttgctgctcaa
cggtgcgttttttacggcatcaggtgccggagcttcctcaagctacgcca
gggcttcgagcttgggtgcgaagccatcttctctagtgggtgcgattacc
acggcttccggcgcactcagttgccggaagggctctcgttgctga back to topCoding sequence (CDS) from alignment at KJ547669:1..1245+ >KJ547669.1-PL.m1 ID=KJ547669.1-PL.m1; Name=PL; organism=Pyrus x bretschneideri; type=CDS; length=1245bp; location=Sequence derived from: KJ547669:1..1245+ (Pyrus x bretschneideri atgccaaaaatggcaaggccctcctcaggcccctcacttctctctctcct cctcctctctctcctcttcccaaccctcatttcctccaggccacttcatc tccaagaccctgaattggtagtacaagaggtacaaaggaatattagcgac tcagtgtctaggaggaacttgggctacttgtcatgcgggacgggcaaccc tatcgacgactgctggcggtgcgacccgaactgggagaagaacaggcaga gcctagcagattgtgcgatagggttcggaaagaacgccataggtggaaga gacgggaagatttacgtggtcacagattccggcgacgacgaccctgtgaa ccccaagccaggaaccctacgacacgccgtcatccaagaggagccattat ggatcattttccagcgcgacatgaccatccagctgaaggaggagctgatc atgaactccttcaagacaatcgacggccggggagcgtccgtacacattgc cggtgggccatgcatcaccatccagttcgtgaccaacattattatccacg gactgcacatacacgattgcaagcagggtgggaacgctatggtgaggagc tcccccagtcacttcgggtggaggaccgtatcggacggcgacggcgtgtc gatcttcggtgggagccacgtgtgggtggaccattgctcgttgtccaact gcaaagatgggttggttgatgcgatttatgggtccactgcgataacgatt tcgaacaattacatgacgcaccatgataaggtgatgcttttggggcatag cgattcgtataccaaggacaagaacatgcaaatcaccattgcgttcaatc actttggagaaggcttggtccaaagaatgccaagatgtaggcatggatat ttccatgtggtgaacaatgactacacccattgggagatgtatgccattgg tgggagtgcagaccctacaatcaatagccaagggaacagatttgctgcac cagatatcagatccagcaaagaggtgaccaaacatgaggatgcacccgaa agtgaatggaagaattggaactggaggtcggaaggagacttgctgctcaa cggtgcgttttttacggcatcaggtgccggagcttcctcaagctacgcca gggcttcgagcttgggtgcgaagccatcttctctagtgggtgcgattacc acggcttccggcgcactcagttgccggaagggctctcgttgctga back to top
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