ATPB, JX118082.1-ATPB.m5 (mRNA) Fragaria nipponica

Transcript Overview


Name	ATPB
Unique Name	JX118082.1-ATPB.m5
Type	mRNA
Organism	Fragaria nipponica ()
Source	genbank
Product	ATP synthase CF1 beta subunit

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
JX118082	region	JX118082:5245..6045 -	NCBI Rosaceae gene and mRNA sequences	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ATPB	JX118082.1-ATPB	Fragaria nipponica	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
JX118082.1-ATPB.m5-cds1	JX118082.1-ATPB.m5-cds1	Fragaria nipponica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
ATPB	JX118082.1-ATPB.p5	Fragaria nipponica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	402238894
nuccore	JX118082.1

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at JX118082:5245..6045-
coding sequence from alignment at JX118082:5245..6045-

mRNA sequence

>JX118082.1-ATPB.m5 ID=JX118082.1-ATPB.m5; Name=ATPB; organism=Fragaria nipponica; type=mRNA; length=801bp
attgccgaatcaaaagtggctctagtctatggtcagatgaatgaaccgcc
cggagctcgtatgagggttggtttaaccgccctaactatggcggaatatt
tccgagatgttaatgaacaagacgtacttctatttatcgacaatatcttc
cgttttgtccaagcaggatccgaagtatccgctttattgggcagaatgcc
ttccgctgtgggttatcaacccacccttagtaccgaaatgggctctttac
aagaaagaattacttctactaaagaagggtccataacttctattcaagca
gtttatgtacctgcggacgatttgaccgatcctgctccggccacgacatt
tgcacatttagatgctactaccgtactatcaagaggattagctgccaaag
gtatctatccagcagtggatcctttagattcaacatcaactatgctccaa
cctcggattgttggtgaagaacattatgaanctgcgcaaagagttaaaga
aactttacaacgttacaaagaacttcaggacattatagctatccttgggt
tagacgaattatccgaagacgatcgcttaaccgtagcaagagcacgaaaa
attgagcgtttcttatcacaaccctttttcgtagcagaagtatttacagg
ttccccaggaaaatatgttggtctagcagaaacaattagaggttttaaat
tgatcctttctggagaattagatggtcttcctgagcaggccttttattta
gtaggtaacatcgatgaagctactgcgaaagctacgaccttagaaactta
g

protein sequence of ATPB

>JX118082.1-ATPB.p5 ID=JX118082.1-ATPB.p5; Name=ATPB; organism=Fragaria nipponica; type=polypeptide; length=266bp
IAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF
RFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQA
VYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQ
PRIVGEEHYEXAQRVKETLQRYKELQDIIAILGLDELSEDDRLTVARARK
IERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYL
VGNIDEATAKATTLET

mRNA from alignment at JX118082:5245..6045-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>JX118082.1-ATPB.m5 ID=JX118082.1-ATPB.m5; Name=ATPB; organism=Fragaria nipponica; type=mRNA; length=801bp; location=Sequence derived from: JX118082:5245..6045- (Fragaria nipponica
ATTGCCGAATCAAAAGTGGCTCTAGTCTATGGTCAGATGAATGAACCGCC
CGGAGCTCGTATGAGGGTTGGTTTAACCGCCCTAACTATGGCGGAATATT
TCCGAGATGTTAATGAACAAGACGTACTTCTATTTATCGACAATATCTTC
CGTTTTGTCCAAGCAGGATCCGAAGTATCCGCTTTATTGGGCAGAATGCC
TTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGCTCTTTAC
AAGAAAGAATTACTTCTACTAAAGAAGGGTCCATAACTTCTATTCAAGCA
GTTTATGTACCTGCGGACGATTTGACCGATCCTGCTCCGGCCACGACATT
TGCACATTTAGATGCTACTACCGTACTATCAAGAGGATTAGCTGCCAAAG
GTATCTATCCAGCAGTGGATCCTTTAGATTCAACATCAACTATGCTCCAA
CCTCGGATTGTTGGTGAAGAACATTATGAANCTGCGCAAAGAGTTAAAGA
AACTTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATCCTTGGGT
TAGACGAATTATCCGAAGACGATCGCTTAACCGTAGCAAGAGCACGAAAA
ATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTATTTACAGG
TTCCCCAGGAAAATATGTTGGTCTAGCAGAAACAATTAGAGGTTTTAAAT
TGATCCTTTCTGGAGAATTAGATGGTCTTCCTGAGCAGGCCTTTTATTTA
GTAGGTAACATCGATGAAGCTACTGCGAAAGCTACGACCTTAGAAACTTA
G

Coding sequence (CDS) from alignment at JX118082:5245..6045-

>JX118082.1-ATPB.m5 ID=JX118082.1-ATPB.m5; Name=ATPB; organism=Fragaria nipponica; type=CDS; length=801bp; location=Sequence derived from: JX118082:5245..6045- (Fragaria nipponica
ATTGCCGAATCAAAAGTGGCTCTAGTCTATGGTCAGATGAATGAACCGCC
CGGAGCTCGTATGAGGGTTGGTTTAACCGCCCTAACTATGGCGGAATATT
TCCGAGATGTTAATGAACAAGACGTACTTCTATTTATCGACAATATCTTC
CGTTTTGTCCAAGCAGGATCCGAAGTATCCGCTTTATTGGGCAGAATGCC
TTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGCTCTTTAC
AAGAAAGAATTACTTCTACTAAAGAAGGGTCCATAACTTCTATTCAAGCA
GTTTATGTACCTGCGGACGATTTGACCGATCCTGCTCCGGCCACGACATT
TGCACATTTAGATGCTACTACCGTACTATCAAGAGGATTAGCTGCCAAAG
GTATCTATCCAGCAGTGGATCCTTTAGATTCAACATCAACTATGCTCCAA
CCTCGGATTGTTGGTGAAGAACATTATGAANCTGCGCAAAGAGTTAAAGA
AACTTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATCCTTGGGT
TAGACGAATTATCCGAAGACGATCGCTTAACCGTAGCAAGAGCACGAAAA
ATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTATTTACAGG
TTCCCCAGGAAAATATGTTGGTCTAGCAGAAACAATTAGAGGTTTTAAAT
TGATCCTTTCTGGAGAATTAGATGGTCTTCCTGAGCAGGCCTTTTATTTA
GTAGGTAACATCGATGAAGCTACTGCGAAAGCTACGACCTTAGAAACTTA
G