MYB40, HM122629.1-MYB40.m1 (mRNA) Malus x domestica

Transcript Overview
NameMYB40
Unique NameHM122629.1-MYB40.m1
TypemRNA
OrganismMalus x domestica (Apple)
Sourcegenbank
ProductMYB domain class transcription factor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
HM122629.1-MYB40.m1-cds1HM122629.1-MYB40.m1-cds1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MYB40HM122629.1-MYB40.p1Malus x domesticapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI302398947
nuccoreHM122629.1
Alignments
Feature NameTypeLocationAnalysis
HM122629 region HM122629:207..1451+ NCBI Rosaceae gene and mRNA sequences
Chr04 chromosome Chr04:27600500..27602047- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr4 chromosome chr4:18377791..18379338+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
Sequences
The following sequences are available for this feature:

mRNA sequence

>HM122629.1-MYB40.m1 ID=HM122629.1-MYB40.m1; Name=MYB40; organism=Malus x domestica; type=mRNA; length=1245bp
atggggaggcactcttgttgctacaagcagaagctaaggaaaggcctctg
gtctcctgaagaggatgagaagcttctcaattacatcaccaagcatggcc
atggctgctggagctcagtccctaaactagcaggtctgcagaggtgtggg
aagagctgcaggttaaggtggataaattacctgaggcccgatttgaagag
agggccattctcacagcaagaagagaatttgataatagaactccatgcag
ttcttggcaacagatggtctcagattgcagcccagttaccaggaagaaca
gacaatgagattaaaaatctatggaattcctgcattaagaagaagctgag
gctaagaggcattgaccccaacactcacaaaccactctcagaagtgcttg
atcaaaatattggcaaagaaattaacaacaacaataatattaagctctcc
ccaacttacaaaagcaatgagaaggcctctgtgggatccaatgagctgag
cctggttgaggcagtgagttcaaggcaccctacttcagcgtccaaaaacc
ggttcaacccggtcgaagtttcttccacctccaaactcataagcagcaat
ggcggcagcagcaaaagtttgacacatgaaggctcccccagtagttgcag
gccttgtgattttgtgggatacttttcttttcctcatcacaataaccaaa
gcaattatggttcgtcgtcggatatggggctccaggcagtaaatcaaaac
agcactttcagcttcctcaatcaaaatccagagttcctgcagccgtccat
gtcatcaagctccgccatattcaccgcccctcctcctcctcccacacgtg
tgaagccttccatcagcctcccatccgataactcctccacctgggactcc
aatgccaacaacagcaacagcagcggcggcggctacttcgacagctctgc
agccttttcttggtggccgccggaggcggtaaaatcggacgacccagaag
agatcaaatggtctgaatatctccacaatacctcatttctgatgggaacc
caccaagcctctcagcctgctacttactcagaaatcaaaccagaatctca
gtcacacattttatcaaacagcttgagtgcaacatcttggcaccaccaga
accaccagcagcagcagcagcaagctttacaagcttcagagatgtacaca
aaggatcttcagagacttgctgtatcttttggtcaaaccctttag
back to top

protein sequence of MYB40

>HM122629.1-MYB40.p1 ID=HM122629.1-MYB40.p1; Name=MYB40; organism=Malus x domestica; type=polypeptide; length=414bp
MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCG
KSCRLRWINYLRPDLKRGPFSQQEENLIIELHAVLGNRWSQIAAQLPGRT
DNEIKNLWNSCIKKKLRLRGIDPNTHKPLSEVLDQNIGKEINNNNNIKLS
PTYKSNEKASVGSNELSLVEAVSSRHPTSASKNRFNPVEVSSTSKLISSN
GGSSKSLTHEGSPSSCRPCDFVGYFSFPHHNNQSNYGSSSDMGLQAVNQN
STFSFLNQNPEFLQPSMSSSSAIFTAPPPPPTRVKPSISLPSDNSSTWDS
NANNSNSSGGGYFDSSAAFSWWPPEAVKSDDPEEIKWSEYLHNTSFLMGT
HQASQPATYSEIKPESQSHILSNSLSATSWHHQNHQQQQQQALQASEMYT
KDLQRLAVSFGQTL
back to top

mRNA from alignment at HM122629:207..1451+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>HM122629.1-MYB40.m1 ID=HM122629.1-MYB40.m1; Name=MYB40; organism=Malus x domestica; type=mRNA; length=1245bp; location=Sequence derived from: HM122629:207..1451+ (Malus x domestica
atggggaggcactcttgttgctacaagcagaagctaaggaaaggcctctg
gtctcctgaagaggatgagaagcttctcaattacatcaccaagcatggcc
atggctgctggagctcagtccctaaactagcaggtctgcagaggtgtggg
aagagctgcaggttaaggtggataaattacctgaggcccgatttgaagag
agggccattctcacagcaagaagagaatttgataatagaactccatgcag
ttcttggcaacagatggtctcagattgcagcccagttaccaggaagaaca
gacaatgagattaaaaatctatggaattcctgcattaagaagaagctgag
gctaagaggcattgaccccaacactcacaaaccactctcagaagtgcttg
atcaaaatattggcaaagaaattaacaacaacaataatattaagctctcc
ccaacttacaaaagcaatgagaaggcctctgtgggatccaatgagctgag
cctggttgaggcagtgagttcaaggcaccctacttcagcgtccaaaaacc
ggttcaacccggtcgaagtttcttccacctccaaactcataagcagcaat
ggcggcagcagcaaaagtttgacacatgaaggctcccccagtagttgcag
gccttgtgattttgtgggatacttttcttttcctcatcacaataaccaaa
gcaattatggttcgtcgtcggatatggggctccaggcagtaaatcaaaac
agcactttcagcttcctcaatcaaaatccagagttcctgcagccgtccat
gtcatcaagctccgccatattcaccgcccctcctcctcctcccacacgtg
tgaagccttccatcagcctcccatccgataactcctccacctgggactcc
aatgccaacaacagcaacagcagcggcggcggctacttcgacagctctgc
agccttttcttggtggccgccggaggcggtaaaatcggacgacccagaag
agatcaaatggtctgaatatctccacaatacctcatttctgatgggaacc
caccaagcctctcagcctgctacttactcagaaatcaaaccagaatctca
gtcacacattttatcaaacagcttgagtgcaacatcttggcaccaccaga
accaccagcagcagcagcagcaagctttacaagcttcagagatgtacaca
aaggatcttcagagacttgctgtatcttttggtcaaaccctttag
back to top

Coding sequence (CDS) from alignment at HM122629:207..1451+

>HM122629.1-MYB40.m1 ID=HM122629.1-MYB40.m1; Name=MYB40; organism=Malus x domestica; type=CDS; length=1245bp; location=Sequence derived from: HM122629:207..1451+ (Malus x domestica
atggggaggcactcttgttgctacaagcagaagctaaggaaaggcctctg
gtctcctgaagaggatgagaagcttctcaattacatcaccaagcatggcc
atggctgctggagctcagtccctaaactagcaggtctgcagaggtgtggg
aagagctgcaggttaaggtggataaattacctgaggcccgatttgaagag
agggccattctcacagcaagaagagaatttgataatagaactccatgcag
ttcttggcaacagatggtctcagattgcagcccagttaccaggaagaaca
gacaatgagattaaaaatctatggaattcctgcattaagaagaagctgag
gctaagaggcattgaccccaacactcacaaaccactctcagaagtgcttg
atcaaaatattggcaaagaaattaacaacaacaataatattaagctctcc
ccaacttacaaaagcaatgagaaggcctctgtgggatccaatgagctgag
cctggttgaggcagtgagttcaaggcaccctacttcagcgtccaaaaacc
ggttcaacccggtcgaagtttcttccacctccaaactcataagcagcaat
ggcggcagcagcaaaagtttgacacatgaaggctcccccagtagttgcag
gccttgtgattttgtgggatacttttcttttcctcatcacaataaccaaa
gcaattatggttcgtcgtcggatatggggctccaggcagtaaatcaaaac
agcactttcagcttcctcaatcaaaatccagagttcctgcagccgtccat
gtcatcaagctccgccatattcaccgcccctcctcctcctcccacacgtg
tgaagccttccatcagcctcccatccgataactcctccacctgggactcc
aatgccaacaacagcaacagcagcggcggcggctacttcgacagctctgc
agccttttcttggtggccgccggaggcggtaaaatcggacgacccagaag
agatcaaatggtctgaatatctccacaatacctcatttctgatgggaacc
caccaagcctctcagcctgctacttactcagaaatcaaaccagaatctca
gtcacacattttatcaaacagcttgagtgcaacatcttggcaccaccaga
accaccagcagcagcagcagcaagctttacaagcttcagagatgtacaca
aaggatcttcagagacttgctgtatcttttggtcaaaccctttag
back to top