HSP1, AF161179.1-HSP1.m1 (mRNA) Malus x domestica

Transcript Overview
NameHSP1
Unique NameAF161179.1-HSP1.m1
TypemRNA
OrganismMalus x domestica (Apple)
Sourcegenbank
Productlow molecular weight heat shock protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
AF161179.1-HSP1.m1-cds1AF161179.1-HSP1.m1-cds1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
HSP1AF161179.1-HSP1.p1Malus x domesticapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI6969974
nuccoreAF161179.1
Alignments
Feature NameTypeLocationAnalysis
AF161179 region AF161179:64..546+ NCBI Rosaceae gene and mRNA sequences
Chr11 chromosome Chr11:7421465..7421947- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr11 chromosome Chr11:7308309..7308791- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr11 chromosome chr11:7367678..7368160+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr11 chromosome chr11:7544509..7544991+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr11 chromosome chr11:7597407..7597889+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
unanchored chromosome unanchored:51647304..51647786+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr11 chromosome chr11:7564486..7564971+ Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr11 chromosome chr11:7537520..7538002- Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr11 chromosome chr11:7520432..7520914- Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr11 chromosome chr11:7366583..7367065- Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr11 chromosome chr11:8190669..8191151- Malus x domestica Whole Genome v1.0p Assembly & Annotation
chr11 chromosome chr11:8137521..8138003- Malus x domestica Whole Genome v1.0p Assembly & Annotation
chr11 chromosome chr11:8167073..8167558- Malus x domestica Whole Genome v1.0p Assembly & Annotation
Sequences
The following sequences are available for this feature:

mRNA sequence

>AF161179.1-HSP1.m1 ID=AF161179.1-HSP1.m1; Name=HSP1; organism=Malus x domestica; type=mRNA; length=483bp
atgtcgttaattcccaactcccgacgaggaagcagcagcgttttcgaccc
attctccctcaatctgtgggaccctttcaaggatttcccgttcccttcct
cctcatcactctccgcatttcctgaattttctcgggagaattcggctttt
gtgaacactagggtcgactggaaggagacccccgaagcccatgtgttcaa
ggcggacgttccggggctgaaaaaagaggaggtgaaggtggaggtggaag
acgacagggtgcttaagatcagcggagagaggaacgtggaggaggaggat
aaaaacgacaagtggtacagagtggagaggagcagcggcaagttcttgag
gaggtttcagcttccggagaacgcaaaggttgatcagattaaggctgcca
tggagaatggagttctaagtgtcactgttccgaaggcggagttgaagaac
gttgacgtcagagccattgaaatttcgggttga
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protein sequence of HSP1

>AF161179.1-HSP1.p1 ID=AF161179.1-HSP1.p1; Name=HSP1; organism=Malus x domestica; type=polypeptide; length=160bp
MSLIPNSRRGSSSVFDPFSLNLWDPFKDFPFPSSSSLSAFPEFSRENSAF
VNTRVDWKETPEAHVFKADVPGLKKEEVKVEVEDDRVLKISGERNVEEED
KNDKWYRVERSSGKFLRRFQLPENAKVDQIKAAMENGVLSVTVPKAELKN
VDVRAIEISG
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mRNA from alignment at AF161179:64..546+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>AF161179.1-HSP1.m1 ID=AF161179.1-HSP1.m1; Name=HSP1; organism=Malus x domestica; type=mRNA; length=483bp; location=Sequence derived from: AF161179:64..546+ (Malus x domestica
atgtcgttaattcccaactcccgacgaggaagcagcagcgttttcgaccc
attctccctcaatctgtgggaccctttcaaggatttcccgttcccttcct
cctcatcactctccgcatttcctgaattttctcgggagaattcggctttt
gtgaacactagggtcgactggaaggagacccccgaagcccatgtgttcaa
ggcggacgttccggggctgaaaaaagaggaggtgaaggtggaggtggaag
acgacagggtgcttaagatcagcggagagaggaacgtggaggaggaggat
aaaaacgacaagtggtacagagtggagaggagcagcggcaagttcttgag
gaggtttcagcttccggagaacgcaaaggttgatcagattaaggctgcca
tggagaatggagttctaagtgtcactgttccgaaggcggagttgaagaac
gttgacgtcagagccattgaaatttcgggttga
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Coding sequence (CDS) from alignment at AF161179:64..546+

>AF161179.1-HSP1.m1 ID=AF161179.1-HSP1.m1; Name=HSP1; organism=Malus x domestica; type=CDS; length=483bp; location=Sequence derived from: AF161179:64..546+ (Malus x domestica
atgtcgttaattcccaactcccgacgaggaagcagcagcgttttcgaccc
attctccctcaatctgtgggaccctttcaaggatttcccgttcccttcct
cctcatcactctccgcatttcctgaattttctcgggagaattcggctttt
gtgaacactagggtcgactggaaggagacccccgaagcccatgtgttcaa
ggcggacgttccggggctgaaaaaagaggaggtgaaggtggaggtggaag
acgacagggtgcttaagatcagcggagagaggaacgtggaggaggaggat
aaaaacgacaagtggtacagagtggagaggagcagcggcaagttcttgag
gaggtttcagcttccggagaacgcaaaggttgatcagattaaggctgcca
tggagaatggagttctaagtgtcactgttccgaaggcggagttgaagaac
gttgacgtcagagccattgaaatttcgggttga
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