CCD4, EU334433.1-CCD4.m1 (mRNA) Rosa x damascena

Transcript Overview


Name	CCD4
Unique Name	EU334433.1-CCD4.m1
Type	mRNA
Organism	Rosa x damascena ()
Source	genbank
Product	carotenoid cleavage dioxygenase 4

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EU334433.1-CCD4.m1-cds1	EU334433.1-CCD4.m1-cds1	Rosa x damascena	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CCD4	EU334433.1-CCD4.p1	Rosa x damascena	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	164551334
nuccore	EU334433.1

Alignments

Feature Name	Type	Location	Analysis
EU334433	region	EU334433:15..1781+	NCBI Rosaceae gene and mRNA sequences

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at EU334433:15..1781+
coding sequence from alignment at EU334433:15..1781+

mRNA sequence

>EU334433.1-CCD4.m1 ID=EU334433.1-CCD4.m1; Name=CCD4; organism=Rosa x damascena; type=mRNA; length=1767bp
atggatgccttgtcttcttctttcctctccacattgcccactcgatcttc
aacaacagcagcaccaaaactcaccccaaccaaatccctcaacatctcct
ccgttagaattgaagaaagacccacaacccaaacacctccaaaaaccaca
acaccacaacccccaccaaaacagactcctcctcctcctcctccatccta
ctcctcaccaccacccacaaaacctaatgcaccagcacttcccgctgtga
tcttcaacctcttcgacgacttcatcaacaacttcgtcgacccgccggtc
cggtcttcagtcgaccccaaacaggccctctccggtaacttcgctcccgt
caccgaacttcccccaaccgaatgtcaagtaatcaaaggctcattaccct
ccgctctcgacggcgcttacatccgcaatggccccaaccctcagtacctc
ccgcgcgggccctaccacctcttcgacggcgacggcatgctccactccat
cagaatctcccaaggccgcgccgtcctctgcagccgcttcgtcaagacct
acaagtacaccgtcgagcgcgacgccggcttccctctcctccccaacgtc
ttctccggcttcaacggcctcaccgcctccgcgacacgtggcgccctctc
cgctgcccgcgtggcctcggggctgtacaatcccgccaacggcattggca
acgcgaacaccagcttggcgtttttcggcgaccgtctctacgcgctcgcc
gagtctgatcttccttacgccgtgcgcttgacggccgacggcgacgtcga
gaccgtgggacggaacgactttaacggcgagctgttcattagcatgacgg
cgcatccgaagatcgatccagacaccggcgagaccttcgctttccgttac
ggcccggtgccgccgtttctcacttacttccggttcgacccgaccggagc
gaaacaacccgacgtgccggtgttctccctgaccagtccttctatgctcc
acgacttcgcgatcactaaaaagtacgccgtgttcgccgacattcagatc
ggaatgaacccgatggagatgatcggcggcggatctccggtggggttgga
cgcttctaaagtatctagaataggaataattccgaaatacgcgaaggacg
attccgagatgaggtggtttgaggtgcccgggttcaacatcatgcatgcg
gttaacgcatgggacgaagacgacgccgttgtgatggtggcgccgaacat
cttatcggcggagcacactctcgagagaatggagctcgttcacgcgctcg
tggagaaggtgaggatcgatctcaagaccgggatcgtttcgcgccaaccg
atctcgacccggaatctggacttcgcggtgataaacccggcttaccaggg
gaaaaagaaccggttcgtgtacgcgggcgtcggggatccgatgccgaaga
tatcgggagtggtgaagctcgacgtgtcgggtgatgagcacaaggagagc
atagtggcgagtaggatgtacggtcagggttgcttcgggggagagccgtt
tttcgtggcgagggatccggagaatccggaggcggaggaggacgacgggt
acgtggtgtcgtatgttcatgatgagaagacgggagagtcgaggtttttg
gtgatggacgccaagtcgtctgagctggaaaccgtggcggaagttaagct
gccacggcgggtgccgtacggttttcacggactgtttgtgagggagagtg
acctgaagaagttgtag

protein sequence of CCD4

>EU334433.1-CCD4.p1 ID=EU334433.1-CCD4.p1; Name=CCD4; organism=Rosa x damascena; type=polypeptide; length=588bp
MDALSSSFLSTLPTRSSTTAAPKLTPTKSLNISSVRIEERPTTQTPPKTT
TPQPPPKQTPPPPPPSYSSPPPTKPNAPALPAVIFNLFDDFINNFVDPPV
RSSVDPKQALSGNFAPVTELPPTECQVIKGSLPSALDGAYIRNGPNPQYL
PRGPYHLFDGDGMLHSIRISQGRAVLCSRFVKTYKYTVERDAGFPLLPNV
FSGFNGLTASATRGALSAARVASGLYNPANGIGNANTSLAFFGDRLYALA
ESDLPYAVRLTADGDVETVGRNDFNGELFISMTAHPKIDPDTGETFAFRY
GPVPPFLTYFRFDPTGAKQPDVPVFSLTSPSMLHDFAITKKYAVFADIQI
GMNPMEMIGGGSPVGLDASKVSRIGIIPKYAKDDSEMRWFEVPGFNIMHA
VNAWDEDDAVVMVAPNILSAEHTLERMELVHALVEKVRIDLKTGIVSRQP
ISTRNLDFAVINPAYQGKKNRFVYAGVGDPMPKISGVVKLDVSGDEHKES
IVASRMYGQGCFGGEPFFVARDPENPEAEEDDGYVVSYVHDEKTGESRFL
VMDAKSSELETVAEVKLPRRVPYGFHGLFVRESDLKKL

mRNA from alignment at EU334433:15..1781+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EU334433.1-CCD4.m1 ID=EU334433.1-CCD4.m1; Name=CCD4; organism=Rosa x damascena; type=mRNA; length=1767bp; location=Sequence derived from: EU334433:15..1781+ (Rosa x damascena
atggatgccttgtcttcttctttcctctccacattgcccactcgatcttc
aacaacagcagcaccaaaactcaccccaaccaaatccctcaacatctcct
ccgttagaattgaagaaagacccacaacccaaacacctccaaaaaccaca
acaccacaacccccaccaaaacagactcctcctcctcctcctccatccta
ctcctcaccaccacccacaaaacctaatgcaccagcacttcccgctgtga
tcttcaacctcttcgacgacttcatcaacaacttcgtcgacccgccggtc
cggtcttcagtcgaccccaaacaggccctctccggtaacttcgctcccgt
caccgaacttcccccaaccgaatgtcaagtaatcaaaggctcattaccct
ccgctctcgacggcgcttacatccgcaatggccccaaccctcagtacctc
ccgcgcgggccctaccacctcttcgacggcgacggcatgctccactccat
cagaatctcccaaggccgcgccgtcctctgcagccgcttcgtcaagacct
acaagtacaccgtcgagcgcgacgccggcttccctctcctccccaacgtc
ttctccggcttcaacggcctcaccgcctccgcgacacgtggcgccctctc
cgctgcccgcgtggcctcggggctgtacaatcccgccaacggcattggca
acgcgaacaccagcttggcgtttttcggcgaccgtctctacgcgctcgcc
gagtctgatcttccttacgccgtgcgcttgacggccgacggcgacgtcga
gaccgtgggacggaacgactttaacggcgagctgttcattagcatgacgg
cgcatccgaagatcgatccagacaccggcgagaccttcgctttccgttac
ggcccggtgccgccgtttctcacttacttccggttcgacccgaccggagc
gaaacaacccgacgtgccggtgttctccctgaccagtccttctatgctcc
acgacttcgcgatcactaaaaagtacgccgtgttcgccgacattcagatc
ggaatgaacccgatggagatgatcggcggcggatctccggtggggttgga
cgcttctaaagtatctagaataggaataattccgaaatacgcgaaggacg
attccgagatgaggtggtttgaggtgcccgggttcaacatcatgcatgcg
gttaacgcatgggacgaagacgacgccgttgtgatggtggcgccgaacat
cttatcggcggagcacactctcgagagaatggagctcgttcacgcgctcg
tggagaaggtgaggatcgatctcaagaccgggatcgtttcgcgccaaccg
atctcgacccggaatctggacttcgcggtgataaacccggcttaccaggg
gaaaaagaaccggttcgtgtacgcgggcgtcggggatccgatgccgaaga
tatcgggagtggtgaagctcgacgtgtcgggtgatgagcacaaggagagc
atagtggcgagtaggatgtacggtcagggttgcttcgggggagagccgtt
tttcgtggcgagggatccggagaatccggaggcggaggaggacgacgggt
acgtggtgtcgtatgttcatgatgagaagacgggagagtcgaggtttttg
gtgatggacgccaagtcgtctgagctggaaaccgtggcggaagttaagct
gccacggcgggtgccgtacggttttcacggactgtttgtgagggagagtg
acctgaagaagttgtag

Coding sequence (CDS) from alignment at EU334433:15..1781+

>EU334433.1-CCD4.m1 ID=EU334433.1-CCD4.m1; Name=CCD4; organism=Rosa x damascena; type=CDS; length=1767bp; location=Sequence derived from: EU334433:15..1781+ (Rosa x damascena
atggatgccttgtcttcttctttcctctccacattgcccactcgatcttc
aacaacagcagcaccaaaactcaccccaaccaaatccctcaacatctcct
ccgttagaattgaagaaagacccacaacccaaacacctccaaaaaccaca
acaccacaacccccaccaaaacagactcctcctcctcctcctccatccta
ctcctcaccaccacccacaaaacctaatgcaccagcacttcccgctgtga
tcttcaacctcttcgacgacttcatcaacaacttcgtcgacccgccggtc
cggtcttcagtcgaccccaaacaggccctctccggtaacttcgctcccgt
caccgaacttcccccaaccgaatgtcaagtaatcaaaggctcattaccct
ccgctctcgacggcgcttacatccgcaatggccccaaccctcagtacctc
ccgcgcgggccctaccacctcttcgacggcgacggcatgctccactccat
cagaatctcccaaggccgcgccgtcctctgcagccgcttcgtcaagacct
acaagtacaccgtcgagcgcgacgccggcttccctctcctccccaacgtc
ttctccggcttcaacggcctcaccgcctccgcgacacgtggcgccctctc
cgctgcccgcgtggcctcggggctgtacaatcccgccaacggcattggca
acgcgaacaccagcttggcgtttttcggcgaccgtctctacgcgctcgcc
gagtctgatcttccttacgccgtgcgcttgacggccgacggcgacgtcga
gaccgtgggacggaacgactttaacggcgagctgttcattagcatgacgg
cgcatccgaagatcgatccagacaccggcgagaccttcgctttccgttac
ggcccggtgccgccgtttctcacttacttccggttcgacccgaccggagc
gaaacaacccgacgtgccggtgttctccctgaccagtccttctatgctcc
acgacttcgcgatcactaaaaagtacgccgtgttcgccgacattcagatc
ggaatgaacccgatggagatgatcggcggcggatctccggtggggttgga
cgcttctaaagtatctagaataggaataattccgaaatacgcgaaggacg
attccgagatgaggtggtttgaggtgcccgggttcaacatcatgcatgcg
gttaacgcatgggacgaagacgacgccgttgtgatggtggcgccgaacat
cttatcggcggagcacactctcgagagaatggagctcgttcacgcgctcg
tggagaaggtgaggatcgatctcaagaccgggatcgtttcgcgccaaccg
atctcgacccggaatctggacttcgcggtgataaacccggcttaccaggg
gaaaaagaaccggttcgtgtacgcgggcgtcggggatccgatgccgaaga
tatcgggagtggtgaagctcgacgtgtcgggtgatgagcacaaggagagc
atagtggcgagtaggatgtacggtcagggttgcttcgggggagagccgtt
tttcgtggcgagggatccggagaatccggaggcggaggaggacgacgggt
acgtggtgtcgtatgttcatgatgagaagacgggagagtcgaggtttttg
gtgatggacgccaagtcgtctgagctggaaaccgtggcggaagttaagct
gccacggcgggtgccgtacggttttcacggactgtttgtgagggagagtg
acctgaagaagttgtag