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Transcript Overview
Name | HNL5 |
Unique Name | AY321296.1-HNL5.m1 |
Type | mRNA |
Organism | Prunus dulcis (Almond) |
Source | genbank |
Product | hnl isoenzyme 5 |
Alignments
The following features are aligned
Feature Name | Type | Location | Analysis | Reference |
AY321296 | region | AY321296:6..2146 + | NCBI Rosaceae gene and mRNA sequences | n/a |
scaffold_1 | supercontig | HNL5:1..1680 . scaffold_1:6606837..6608976 + | | n/a |
scaffold_1 | supercontig | HNL5:1..1680 . scaffold_1:6631068..6633424 - | | n/a |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
AY321296.1-HNL5.m1-cds1 | AY321296.1-HNL5.m1-cds1 | Prunus dulcis | CDS |
AY321296.1-HNL5.m1-cds2 | AY321296.1-HNL5.m1-cds2 | Prunus dulcis | CDS |
AY321296.1-HNL5.m1-cds3 | AY321296.1-HNL5.m1-cds3 | Prunus dulcis | CDS |
AY321296.1-HNL5.m1-cds4 | AY321296.1-HNL5.m1-cds4 | Prunus dulcis | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
HNL5 | AY321296.1-HNL5.p1 | Prunus dulcis | polypeptide |
Cross References
External references for this mRNA
Sequences
The
following sequences are available for this feature:
mRNA sequence >AY321296.1-HNL5.m1 ID=AY321296.1-HNL5.m1; Name=HNL5; organism=Prunus dulcis; type=mRNA; length=1680bp atggagaaatcaacaatgtcagttatactatttgtgttgcatcttcttgt tcttcatcttcagtattcagaggttcactcgcttgccaatacttctgctc atgattttagctacttgaagtttgtgtacaacgccactgatacaagctcg gaaggatcatatgactacattgtaatcggtggaggaacatcagggtgtcc attggcagcaactttatcagaaaaatacaaggtgcttcttctagaaagag gcactattgctacagaatacccgaacacgttgactgcagatgggtttgca tataatctgcagcaacaagatgatggaaagacgccagttgaaaggttcgt gtccgaagatggcattgataatgtgcgagccaggatcctcggtggcacga ccataatcaatgcaggcgtctacgccagagctaacatttcattctatagt caaacaggaattgaatgggacctggatttggtcaataagacatatgagtg ggttgaagacgccattgtggtcaagccaaataatcaatcttggcaatctg ttataggagagggattcttggaggcgggtattcttccagacaatggattt agtttggatcacgaagcaggaactagactcaccggctcaacttttgacaa taatggaacgcgacatgcggctgatgaactgcttaataaaggagacccta ataacttgctagttgcagttcaggcctcagtagagaagatcctcttctct tccaatacatcaaatttgtcagctattggagtcatatatacggattctga tggaaactctcatcaggcatttgtacgcggtaacggagaagttattgtta gtgcagggacaatcggaacgcctcagcttctactacttagtggcgttgga ccagagtcttacctatcttctctcaacatcacagttgttcagccgaatcc ttatgttgggcagtttgtgtatgacaatcctcgtaatttcattaatattt tgcccccaaatccaattgaagcctctgttgtaactgttttaggcattaga agtgattattatcaagtttctctgtcaagcttgccattttccactccacc ctttagtctttttcctacaacatcttaccccctcccaaattcgacttttg ctcatattgntagccaagttccaggaccattgtctcatggttctgtcacg ctaaattcatcatctgacgtgagaatcgctccaaatattaaattcaatta ctattcaaattccacagaccttgctaattgtgtnagcggcatgaagaagc ttggtgacttattaaggacaaaggcattagaaccatataaagctcgagat gtgctgggaattgacggtttcaattatttgggagtacctttgccagagaa ccaaacagatgatgcatccttcgaaacattttgtctagataatgtagctt catactggcattaccacggtggaagccttgttgggaaagtgcttgatgac agtttccgtgttatggggatcaaagcattacgcgttgttgatgcctccac tttcccttacgaaccaancagccatcctcagggcttctatctgatgttag gaaggtatgtgggccttcaaatcctgcaagaaaggtcaatccggttggag gctattcataatattcaagagtccatgtga back to topprotein sequence of HNL5 >AY321296.1-HNL5.p1 ID=AY321296.1-HNL5.p1; Name=HNL5; organism=Prunus dulcis; type=polypeptide; length=559bp MEKSTMSVILFVLHLLVLHLQYSEVHSLANTSAHDFSYLKFVYNATDTSS EGSYDYIVIGGGTSGCPLAATLSEKYKVLLLERGTIATEYPNTLTADGFA YNLQQQDDGKTPVERFVSEDGIDNVRARILGGTTIINAGVYARANISFYS QTGIEWDLDLVNKTYEWVEDAIVVKPNNQSWQSVIGEGFLEAGILPDNGF SLDHEAGTRLTGSTFDNNGTRHAADELLNKGDPNNLLVAVQASVEKILFS SNTSNLSAIGVIYTDSDGNSHQAFVRGNGEVIVSAGTIGTPQLLLLSGVG PESYLSSLNITVVQPNPYVGQFVYDNPRNFINILPPNPIEASVVTVLGIR SDYYQVSLSSLPFSTPPFSLFPTTSYPLPNSTFAHIXSQVPGPLSHGSVT LNSSSDVRIAPNIKFNYYSNSTDLANCVSGMKKLGDLLRTKALEPYKARD VLGIDGFNYLGVPLPENQTDDASFETFCLDNVASYWHYHGGSLVGKVLDD SFRVMGIKALRVVDASTFPYEPXSHPQGFYLMLGRYVGLQILQERSIRLE AIHNIQESM back to topmRNA from alignment at AY321296:6..2146+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >AY321296.1-HNL5.m1 ID=AY321296.1-HNL5.m1; Name=HNL5; organism=Prunus dulcis; type=mRNA; length=2141bp; location=Sequence derived from: AY321296:6..2146+ (Prunus dulcis atggagaaatcaacaatgtcagttatactatttgtgttgcatcttcttgt
tcttcatcttcagtattcagaggttcactcgcttgccaatacttctgctc
atggtaaatttccatcttcagtattcatttaacagcaaaatgtgtagatt
tataattaagaaaactgacacaagtagtgcaagaaacaagctaatttaga
tgcatgttgaaaaaaatctttcatctcttcacatatattttgcagatttt
agctacttgaagtttgtgtacaacgccactgatacaagctcggaaggatc
atatgactacattgtaatcggtggaggaacatcagggtgtccattggcag
caactttatcagaaaaatacaaggtgcttcttctagaaagaggcactatt
gctacagaatacccgaacacgttgactgcagatgggtttgcatataatct
gcagcaacaagatgatggaaagacgccagttgaaaggttcgtgtccgaag
atggcattgataatgtgcgagccaggatcctcggtggcacgaccataatc
aatgcaggcgtctacgccagagctaacatttcattctatagtcaaacagg
aattgaatgggacctggatttggtcaataagacatatgagtgggttgaag
acgccattgtggtcaagccaaataatcaatcttggcaatctgttatagga
gagggattcttggaggcgggtattcttccagacaatggatttagtttgga
tcacgaagcaggaactagactcaccggctcaacttttgacaataatggaa
cgcgacatgcggctgatgaactgcttaataaaggagaccctaataacttg
ctagttgcagttcaggcctcagtagagaagatcctcttctcttccaatac
atcaagtatgttgcatcagtgatatttaatggtagctcctagtttgtcat
gctgcactcgaaaattattattttatcattttaaaatactaacagaatag
tgtgaagtctcatatttcccttccatatttcccaaatttccataaacaaa
acttcccaattctccttcgtttagtttgacaataattataagctattctc
taatgcagatttgtcagctattggagtcatatatacggattctgatggaa
actctcatcaggcatttgtacgcggtaacggagaagttattgttagtgca
gggacaatcggaacgcctcagcttctactacttagtggcgttggaccaga
gtcttacctatcttctctcaacatcacagttgttcagccgaatccttatg
ttgggcagtttgtgtatgacaatcctcgtaatttcattaatattttgccc
ccaaatccaattgaagcctctgttgtaactgttttaggcattagaagtga
ttattatcaagtttctctgtcaagcttgccattttccactccacccttta
gtctttttcctacaacatcttaccccctcccaaattcgacttttgctcat
attgntagccaagttccaggaccattgtctcatggttctgtcacgctaaa
ttcatcatctgacgtgagaatcgctccaaatattaaattcaattactatt
caaattccacagaccttgctaattgtgtnagcggcatgaagaagcttggt
gacttattaaggacaaaggcattagaaccatataaagctcgagatgtgct
gggaattgacggtttcaattatttgggagtacctttgccagagaaccaaa
cagatgatgcatccttcgaaacattttgtctagataatgtagcttcatac
tggcattaccacggtggaagccttgttgggaaagtgcttgatgacagttt
ccgtgttatggggatcaaagcattacgcgttgttgatgcctccactttcc
cttacgaaccaancagccatcctcagggcttctatctgatgttaggaagg
tatgtgatgcacacttccaaccactagagattctcaatattttgttgttg
ttgtaatgaactctctgccgcattgctcttttttattaatccttaaaatt
ttgtgttttgcgcaggtatgtgggccttcaaatcctgcaagaaaggtcaa
tccggttggaggctattcataatattcaagagtccatgtga back to topCoding sequence (CDS) from alignment at AY321296:6..2146+ >AY321296.1-HNL5.m1 ID=AY321296.1-HNL5.m1; Name=HNL5; organism=Prunus dulcis; type=CDS; length=1680bp; location=Sequence derived from: AY321296:6..2146+ (Prunus dulcis atggagaaatcaacaatgtcagttatactatttgtgttgcatcttcttgt tcttcatcttcagtattcagaggttcactcgcttgccaatacttctgctc atgattttagctacttgaagtttgtgtacaacgccactgatacaagctcg gaaggatcatatgactacattgtaatcggtggaggaacatcagggtgtcc attggcagcaactttatcagaaaaatacaaggtgcttcttctagaaagag gcactattgctacagaatacccgaacacgttgactgcagatgggtttgca tataatctgcagcaacaagatgatggaaagacgccagttgaaaggttcgt gtccgaagatggcattgataatgtgcgagccaggatcctcggtggcacga ccataatcaatgcaggcgtctacgccagagctaacatttcattctatagt caaacaggaattgaatgggacctggatttggtcaataagacatatgagtg ggttgaagacgccattgtggtcaagccaaataatcaatcttggcaatctg ttataggagagggattcttggaggcgggtattcttccagacaatggattt agtttggatcacgaagcaggaactagactcaccggctcaacttttgacaa taatggaacgcgacatgcggctgatgaactgcttaataaaggagacccta ataacttgctagttgcagttcaggcctcagtagagaagatcctcttctct tccaatacatcaaatttgtcagctattggagtcatatatacggattctga tggaaactctcatcaggcatttgtacgcggtaacggagaagttattgtta gtgcagggacaatcggaacgcctcagcttctactacttagtggcgttgga ccagagtcttacctatcttctctcaacatcacagttgttcagccgaatcc ttatgttgggcagtttgtgtatgacaatcctcgtaatttcattaatattt tgcccccaaatccaattgaagcctctgttgtaactgttttaggcattaga agtgattattatcaagtttctctgtcaagcttgccattttccactccacc ctttagtctttttcctacaacatcttaccccctcccaaattcgacttttg ctcatattgntagccaagttccaggaccattgtctcatggttctgtcacg ctaaattcatcatctgacgtgagaatcgctccaaatattaaattcaatta ctattcaaattccacagaccttgctaattgtgtnagcggcatgaagaagc ttggtgacttattaaggacaaaggcattagaaccatataaagctcgagat gtgctgggaattgacggtttcaattatttgggagtacctttgccagagaa ccaaacagatgatgcatccttcgaaacattttgtctagataatgtagctt catactggcattaccacggtggaagccttgttgggaaagtgcttgatgac agtttccgtgttatggggatcaaagcattacgcgttgttgatgcctccac tttcccttacgaaccaancagccatcctcagggcttctatctgatgttag gaaggtatgtgggccttcaaatcctgcaagaaaggtcaatccggttggag gctattcataatattcaagagtccatgtga back to top
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