CIPK13, KT336295.1-CIPK13.m1 (mRNA) Malus domestica

Transcript Overview


Name	CIPK13
Unique Name	KT336295.1-CIPK13.m1
Type	mRNA
Organism	Malus domestica ()
Source	genbank
Product	CBL-interacting serine/threonine-protein kinase 13

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
KT336295	region	KT336295:1..1392 +	NCBI Rosaceae gene and mRNA sequences	n/a
Chr05	chromosome	Chr05:43234137..43235528 -	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KT336295.1-CIPK13.m1-cds1	KT336295.1-CIPK13.m1-cds1	Malus domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CIPK13	KT336295.1-CIPK13.p1	Malus domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	965434029
nuccore	KT336295.1

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KT336295:1..1392+
coding sequence from alignment at KT336295:1..1392+

mRNA sequence

>KT336295.1-CIPK13.m1 ID=KT336295.1-CIPK13.m1; Name=CIPK13; organism=Malus domestica; type=mRNA; length=1392bp
atggaggtgaaaaaaggaaacatattgatgcacaagtacgaggtgggacg
gttgcttggaaaagggacatttgccaaggtttaccatgcacggaacctga
agtccggccagagcgttgcaattaagataatcgacaaggagaaggtgcag
aaggtcggattgattgatcagatcaagagggaaatctccgtgatgcgcct
tgtgaggcacccgaatgtggttcagctctttgaggttatggccagcaaga
ccaagatttattttgccatggagtacgtgagaggcggggagcttttcaac
aaggttgccaaagggaagcttaaggaagatgtggcaagaaaatactttca
gcaactgattggggctgtcgattactgccacagtcgaggggtctatcacc
gcgacatcaagccagagaatctcttggtggacgagaatggaaacctcaaa
gtttcggattttggattaagcgcattgtgggagtctaggggacaagatgg
cctcctccacaccacgtgtggtacgccagcgtatgtagcaccagaggtaa
taaacaagaaaggttatgatggcgcaaaggcggatacatggtcttgtggg
gttgtcctctttgttctgctggccgccttcctgccattccatgacaccaa
cctcatggaaatgtataggaaaatcagcagaggagacttcaagagccctc
agtggtttcccccagaggtacgtaagcttctttcgaggattctcgatcct
aatccaagctcaagaataagtgttgacaagatcatggagaatagttggtt
caagaaggggtttaaacaaatcgaagcatctttagcccctccgtgtgatc
caaacacctcaatccgtgatgtccatgaggcttttgcatcaacaaatcat
tcagctgaagaaagttccaacaagaattctagcggagcaggaacaagccc
catgaggccaacatgtttcaatgcgttcgacatcatatctctctcgccag
gttttgacctatccggtttgtttgagaatgatatgaatcacagaccgcag
gagcgattcatgagcacacaaccagccgcgacaattgtttcaaaatttga
agccatagcacagacggagaggttcaaatgcctgaaaaaagacggaaccc
ttaaactacagggtagcaaggaaggaaggaaagggcagctaggcatcgat
gctgagattttcgaggtcacaccttcattttatgtcgtggagatgaagaa
aacggctggggacacattggaatacatggagttctgtgacaatggcttga
agccctctcttaaggatatagtatggacttggcaaggaaccgagcagcaa
cagcaaccgccgctagtagtagcacctgaagtcgtttcttag

protein sequence of CIPK13

>KT336295.1-CIPK13.p1 ID=KT336295.1-CIPK13.p1; Name=CIPK13; organism=Malus domestica; type=polypeptide; length=463bp
MEVKKGNILMHKYEVGRLLGKGTFAKVYHARNLKSGQSVAIKIIDKEKVQ
KVGLIDQIKREISVMRLVRHPNVVQLFEVMASKTKIYFAMEYVRGGELFN
KVAKGKLKEDVARKYFQQLIGAVDYCHSRGVYHRDIKPENLLVDENGNLK
VSDFGLSALWESRGQDGLLHTTCGTPAYVAPEVINKKGYDGAKADTWSCG
VVLFVLLAAFLPFHDTNLMEMYRKISRGDFKSPQWFPPEVRKLLSRILDP
NPSSRISVDKIMENSWFKKGFKQIEASLAPPCDPNTSIRDVHEAFASTNH
SAEESSNKNSSGAGTSPMRPTCFNAFDIISLSPGFDLSGLFENDMNHRPQ
ERFMSTQPAATIVSKFEAIAQTERFKCLKKDGTLKLQGSKEGRKGQLGID
AEIFEVTPSFYVVEMKKTAGDTLEYMEFCDNGLKPSLKDIVWTWQGTEQQ
QQPPLVVAPEVVS

mRNA from alignment at KT336295:1..1392+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>KT336295.1-CIPK13.m1 ID=KT336295.1-CIPK13.m1; Name=CIPK13; organism=Malus domestica; type=mRNA; length=1392bp; location=Sequence derived from: KT336295:1..1392+ (Malus domestica
atggaggtgaaaaaaggaaacatattgatgcacaagtacgaggtgggacg
gttgcttggaaaagggacatttgccaaggtttaccatgcacggaacctga
agtccggccagagcgttgcaattaagataatcgacaaggagaaggtgcag
aaggtcggattgattgatcagatcaagagggaaatctccgtgatgcgcct
tgtgaggcacccgaatgtggttcagctctttgaggttatggccagcaaga
ccaagatttattttgccatggagtacgtgagaggcggggagcttttcaac
aaggttgccaaagggaagcttaaggaagatgtggcaagaaaatactttca
gcaactgattggggctgtcgattactgccacagtcgaggggtctatcacc
gcgacatcaagccagagaatctcttggtggacgagaatggaaacctcaaa
gtttcggattttggattaagcgcattgtgggagtctaggggacaagatgg
cctcctccacaccacgtgtggtacgccagcgtatgtagcaccagaggtaa
taaacaagaaaggttatgatggcgcaaaggcggatacatggtcttgtggg
gttgtcctctttgttctgctggccgccttcctgccattccatgacaccaa
cctcatggaaatgtataggaaaatcagcagaggagacttcaagagccctc
agtggtttcccccagaggtacgtaagcttctttcgaggattctcgatcct
aatccaagctcaagaataagtgttgacaagatcatggagaatagttggtt
caagaaggggtttaaacaaatcgaagcatctttagcccctccgtgtgatc
caaacacctcaatccgtgatgtccatgaggcttttgcatcaacaaatcat
tcagctgaagaaagttccaacaagaattctagcggagcaggaacaagccc
catgaggccaacatgtttcaatgcgttcgacatcatatctctctcgccag
gttttgacctatccggtttgtttgagaatgatatgaatcacagaccgcag
gagcgattcatgagcacacaaccagccgcgacaattgtttcaaaatttga
agccatagcacagacggagaggttcaaatgcctgaaaaaagacggaaccc
ttaaactacagggtagcaaggaaggaaggaaagggcagctaggcatcgat
gctgagattttcgaggtcacaccttcattttatgtcgtggagatgaagaa
aacggctggggacacattggaatacatggagttctgtgacaatggcttga
agccctctcttaaggatatagtatggacttggcaaggaaccgagcagcaa
cagcaaccgccgctagtagtagcacctgaagtcgtttcttag

Coding sequence (CDS) from alignment at KT336295:1..1392+

>KT336295.1-CIPK13.m1 ID=KT336295.1-CIPK13.m1; Name=CIPK13; organism=Malus domestica; type=CDS; length=1392bp; location=Sequence derived from: KT336295:1..1392+ (Malus domestica
atggaggtgaaaaaaggaaacatattgatgcacaagtacgaggtgggacg
gttgcttggaaaagggacatttgccaaggtttaccatgcacggaacctga
agtccggccagagcgttgcaattaagataatcgacaaggagaaggtgcag
aaggtcggattgattgatcagatcaagagggaaatctccgtgatgcgcct
tgtgaggcacccgaatgtggttcagctctttgaggttatggccagcaaga
ccaagatttattttgccatggagtacgtgagaggcggggagcttttcaac
aaggttgccaaagggaagcttaaggaagatgtggcaagaaaatactttca
gcaactgattggggctgtcgattactgccacagtcgaggggtctatcacc
gcgacatcaagccagagaatctcttggtggacgagaatggaaacctcaaa
gtttcggattttggattaagcgcattgtgggagtctaggggacaagatgg
cctcctccacaccacgtgtggtacgccagcgtatgtagcaccagaggtaa
taaacaagaaaggttatgatggcgcaaaggcggatacatggtcttgtggg
gttgtcctctttgttctgctggccgccttcctgccattccatgacaccaa
cctcatggaaatgtataggaaaatcagcagaggagacttcaagagccctc
agtggtttcccccagaggtacgtaagcttctttcgaggattctcgatcct
aatccaagctcaagaataagtgttgacaagatcatggagaatagttggtt
caagaaggggtttaaacaaatcgaagcatctttagcccctccgtgtgatc
caaacacctcaatccgtgatgtccatgaggcttttgcatcaacaaatcat
tcagctgaagaaagttccaacaagaattctagcggagcaggaacaagccc
catgaggccaacatgtttcaatgcgttcgacatcatatctctctcgccag
gttttgacctatccggtttgtttgagaatgatatgaatcacagaccgcag
gagcgattcatgagcacacaaccagccgcgacaattgtttcaaaatttga
agccatagcacagacggagaggttcaaatgcctgaaaaaagacggaaccc
ttaaactacagggtagcaaggaaggaaggaaagggcagctaggcatcgat
gctgagattttcgaggtcacaccttcattttatgtcgtggagatgaagaa
aacggctggggacacattggaatacatggagttctgtgacaatggcttga
agccctctcttaaggatatagtatggacttggcaaggaaccgagcagcaa
cagcaaccgccgctagtagtagcacctgaagtcgtttcttag