Prunus-TE-6K cherry SNP-estimate | GDR

Map Overview


Name	Prunus-TE-6K cherry SNP-estimate
Species	Prunus persica Prunus dulcis
Map type	genetic
Population type	F2
Map unit	cM
Maternal parent	Texas
Paternal parent	Earlygold
Population size	111
Number of loci	5696
Number of QTL	7
Number of linkage groups	8
Publication	[view all]
Contact	Cameron Peace

Stock

Name

Type

Details

Texas_x_Earlygold-F2

population

Description:	F2 population obtained by selfing the F1 hybrid plant ‘MB 1.37’ (almond ‘Texas’ 3 peach ‘Earlygold’)
Population size:	111
Alias:	TxE

Contact

Name

Details

Cameron Peace

First name:	Cameron
Last name:	Peace
Title:	Professor
Institution:	Washington State University
Address:	Department of Horticulture, Washington State University, Pullman, Washington, United States of America
Country:	USA
Email:	cpeace@wsu.edu

Publication


Year	Publications
2012	Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.
2017	Mgbechi-Ezeri J, Porter L, Johnson KB, Oraguzie N. Assessment of sweet cherry (Prunus avium L.) genotypes for response to bacterial canker disease. Euphytica. 2017; 213:145.

Map Loci

This map contains 5,696 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15592471	RosBREED_snp_sweet_cherry_Pp8_15592471	marker_locus	33.57 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15612966	RosBREED_snp_sweet_cherry_Pp8_15612966	marker_locus	33.65 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15624542	RosBREED_snp_sweet_cherry_Pp8_15624542	marker_locus	33.69 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15634495	RosBREED_snp_sweet_cherry_Pp8_15634495	marker_locus	33.73 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_f_Pp8_15645263	RosBREED_snp_tart_cherry_f_Pp8_15645263	marker_locus	33.77 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15671337	RosBREED_snp_sweet_cherry_Pp8_15671337	marker_locus	33.88 cM
Prunus-TE-6K cherry SNP-estimate.8	RosCOS1289-122_snp_sweet_cherry_Pp8_15671883	RosCOS1289-122_snp_sweet_cherry_Pp8_15671883	marker_locus	33.88 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_a_Pp8_15679725	RosBREED_snp_tart_cherry_a_Pp8_15679725	marker_locus	33.91 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15683880	RosBREED_snp_sweet_cherry_Pp8_15683880	marker_locus	33.92 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15698530	RosBREED_snp_sweet_cherry_Pp8_15698530	marker_locus	33.98 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15711794	RosBREED_snp_sweet_cherry_Pp8_15711794	marker_locus	34.03 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15729220	RosBREED_snp_sweet_cherry_Pp8_15729220	marker_locus	34.1 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15762379	RosBREED_snp_sweet_cherry_Pp8_15762379	marker_locus	34.23 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15797693	RosBREED_snp_sweet_cherry_Pp8_15797693	marker_locus	34.37 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_a_Pp8_15807429	RosBREED_snp_tart_cherry_a_Pp8_15807429	marker_locus	34.41 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15813746	RosBREED_snp_sweet_cherry_Pp8_15813746	marker_locus	34.43 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15923847	RosBREED_snp_sweet_cherry_Pp8_15923847	marker_locus	34.87 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_a_Pp8_15936565	RosBREED_snp_tart_cherry_a_Pp8_15936565	marker_locus	34.92 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15941908	RosBREED_snp_sweet_cherry_Pp8_15941908	marker_locus	34.94 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15956108	RosBREED_snp_sweet_cherry_Pp8_15956108	marker_locus	34.99 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_15984239	RosBREED_snp_sweet_cherry_Pp8_15984239	marker_locus	35.1 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_f_Pp8_16006569	RosBREED_snp_tart_cherry_f_Pp8_16006569	marker_locus	35.19 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_16019309	RosBREED_snp_sweet_cherry_Pp8_16019309	marker_locus	35.24 cM
Prunus-TE-6K cherry SNP-estimate.8	RosCOS1338-411_snp_sweet_cherry_Pp8_16036151	RosCOS1338-411_snp_sweet_cherry_Pp8_16036151	marker_locus	35.31 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_a_Pp8_16099600	RosBREED_snp_tart_cherry_a_Pp8_16099600	marker_locus	35.56 cM

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Map QTL

This map contains 7 QTL:

Download Table


Linkage Group	Name	Type	Start	Stop	Peak
Prunus-TE-6K cherry SNP-estimate.2	qRPSS.TE-LG2.1	QTL	20 cM	35 cM	28 cM
Prunus-TE-6K cherry SNP-estimate.2	qRPSS.TE-LG2.2	QTL	40 cM	46 cM	43 cM
Prunus-TE-6K cherry SNP-estimate.3	qRPSS.TE-LG3.1	QTL	35 cM	46 cM	44 cM
Prunus-TE-6K cherry SNP-estimate.5	qRPSS.TE-LG5.1	QTL	2 cM	13 cM	9 cM
Prunus-TE-6K cherry SNP-estimate.5	qRPSS.TE-LG5.2	QTL	24 cM	40 cM	27 cM
Prunus-TE-6K cherry SNP-estimate.7	qRPSS.TE-LG7.1	QTL	3 cM	7 cM	5 cM
Prunus-TE-6K cherry SNP-estimate.8	qRPSS.TE-LG8.1	QTL	34 cM	55 cM	39 cM

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