Prunus-TE-6K cherry SNP-estimate | GDR

Map Overview


Name	Prunus-TE-6K cherry SNP-estimate
Species	Prunus persica Prunus dulcis
Map type	genetic
Population type	F2
Map unit	cM
Maternal parent	Texas
Paternal parent	Earlygold
Population size	111
Number of loci	5696
Number of QTL	7
Number of linkage groups	8
Publication	[view all]
Contact	Cameron Peace

Stock

Name

Type

Details

Texas_x_Earlygold-F2

population

Description:	F2 population obtained by selfing the F1 hybrid plant ‘MB 1.37’ (almond ‘Texas’ 3 peach ‘Earlygold’)
Population size:	111
Alias:	TxE

Contact

Name

Details

Cameron Peace

First name:	Cameron
Last name:	Peace
Title:	Professor
Institution:	Washington State University
Address:	Department of Horticulture, Washington State University, Pullman, Washington, United States of America
Country:	USA
Email:	cpeace@wsu.edu

Publication


Year	Publications
2012	Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.
2017	Mgbechi-Ezeri J, Porter L, Johnson KB, Oraguzie N. Assessment of sweet cherry (Prunus avium L.) genotypes for response to bacterial canker disease. Euphytica. 2017; 213:145.

Map Loci

This map contains 5,696 marker loci:

Download Table


Linkage Group	Marker Name	Locus Name	Type	Position
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_f_Pp8_18708153	RosBREED_snp_tart_cherry_f_Pp8_18708153	marker_locus	47.13 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_18723319	RosBREED_snp_sweet_cherry_Pp8_18723319	marker_locus	47.22 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_18748168	RosBREED_snp_sweet_cherry_Pp8_18748168	marker_locus	47.38 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_a_Pp8_18772418	RosBREED_snp_tart_cherry_a_Pp8_18772418	marker_locus	47.53 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_18773645	RosBREED_snp_sweet_cherry_Pp8_18773645	marker_locus	47.54 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_18803068	RosBREED_snp_sweet_cherry_Pp8_18803068	marker_locus	47.72 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_18854478	RosBREED_snp_sweet_cherry_Pp8_18854478	marker_locus	48.04 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_f_Pp8_18861509	RosBREED_snp_tart_cherry_f_Pp8_18861509	marker_locus	48.09 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_18909804	RosBREED_snp_sweet_cherry_Pp8_18909804	marker_locus	48.39 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_18935692	RosBREED_snp_sweet_cherry_Pp8_18935692	marker_locus	48.55 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_a_Pp8_18983906	RosBREED_snp_tart_cherry_a_Pp8_18983906	marker_locus	48.85 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_19017167	RosBREED_snp_sweet_cherry_Pp8_19017167	marker_locus	49.06 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_19043735	RosBREED_snp_sweet_cherry_Pp8_19043735	marker_locus	49.34 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_f_Pp8_19064686	RosBREED_snp_tart_cherry_f_Pp8_19064686	marker_locus	49.6 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_a_Pp8_19065244	RosBREED_snp_tart_cherry_a_Pp8_19065244	marker_locus	49.61 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_19072042	RosBREED_snp_sweet_cherry_Pp8_19072042	marker_locus	49.69 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_a_Pp8_19111206	RosBREED_snp_tart_cherry_a_Pp8_19111206	marker_locus	50.17 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_19154556	RosBREED_snp_sweet_cherry_Pp8_19154556	marker_locus	50.7 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_19176783	RosBREED_snp_sweet_cherry_Pp8_19176783	marker_locus	50.98 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_f_Pp8_19202441	RosBREED_snp_tart_cherry_f_Pp8_19202441	marker_locus	51.29 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_19233270	RosBREED_snp_sweet_cherry_Pp8_19233270	marker_locus	51.54 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_19257975	RosBREED_snp_sweet_cherry_Pp8_19257975	marker_locus	51.62 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_19284279	RosBREED_snp_sweet_cherry_Pp8_19284279	marker_locus	51.71 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_tart_cherry_a_Pp8_19288043	RosBREED_snp_tart_cherry_a_Pp8_19288043	marker_locus	51.72 cM
Prunus-TE-6K cherry SNP-estimate.8	RosBREED_snp_sweet_cherry_Pp8_19305148	RosBREED_snp_sweet_cherry_Pp8_19305148	marker_locus	51.77 cM

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Map QTL

This map contains 7 QTL:

Download Table


Linkage Group	Name	Type	Start	Stop	Peak
Prunus-TE-6K cherry SNP-estimate.2	qRPSS.TE-LG2.1	QTL	20 cM	35 cM	28 cM
Prunus-TE-6K cherry SNP-estimate.2	qRPSS.TE-LG2.2	QTL	40 cM	46 cM	43 cM
Prunus-TE-6K cherry SNP-estimate.3	qRPSS.TE-LG3.1	QTL	35 cM	46 cM	44 cM
Prunus-TE-6K cherry SNP-estimate.5	qRPSS.TE-LG5.1	QTL	2 cM	13 cM	9 cM
Prunus-TE-6K cherry SNP-estimate.5	qRPSS.TE-LG5.2	QTL	24 cM	40 cM	27 cM
Prunus-TE-6K cherry SNP-estimate.7	qRPSS.TE-LG7.1	QTL	3 cM	7 cM	5 cM
Prunus-TE-6K cherry SNP-estimate.8	qRPSS.TE-LG8.1	QTL	34 cM	55 cM	39 cM

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